|Accounts of Chemical Research (2002) 35(6):413-21|
|New York Structural Genomics Research Consortium|
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From a physical perspective, the native structure of a protein is a consequence of physical forces acting on the protein and solvent atoms during the folding process. ...
From a biological perspective, the native structure of proteins is a result of evolution over millions of years. Correspondingly, there are two types of protein structure prediction methods, de novo prediction and comparative modeling. We review comparative protein structure modeling and discuss the incorporation of physical considerations into the modeling process. A good starting point for achieving this aim is provided by comparative modeling by satisfaction of spatial restraints. Incorporation of physical considerations is illustrated by an inclusion of solvation effects into the modeling of loops.
|Models, Molecular Proteins Protein Conformation Evolution, Molecular Computer Simulation Biophysical Phenomena Biophysics |
|72 (Last update: 02/09/2019 8:58:11pm)|
|Acc Chem Res. 2002 Jun;35(6):413-21.|