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Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels.

Lin J, Gerstein M,
Genome Research (2000) 10:808-18 PublishedPSI:Phase 2  
Northeast Structural Genomics Consortium

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We built whole-genome trees based on the presence or absence of particular molecular features, either orthologs or folds, in the genomes of a number of recently sequenced microorganisms. ...
Computational Biology Phylogeny Genome, Archaeal RNA, Ribosomal Sequence Homology, Nucleic Acid Genome, Bacterial Genome, Fungal Genome 
131 (Last update: 07/22/2017 11:37:37am)  
Genome Res. 2000 Jun;10(6):808-18.