Biochemical and Structural Analysis of an Eis Family Aminoglycoside Acetyltransferase from Bacillus anthracis. Green KD, Biswas T, Chang C, Wu R, Chen W, Janes BK, Chalupska D, Gornicki P, Hanna PC, Tsodikov OV, Joachimiak A, Garneau-Tsodikova S MCSG, Biochemistry (2015) 54:3197-206 (Details)(Pubmed ID: 25928210)(DOI: 10.1021/acs.biochem.5b00244) Target: APC68255 PDB ID(s): 3N7Z Times cited: 15
2014 (click to unfold)
Correction to The Specialized Hsp70 (HscA) Interdomain Linker Binds to Its Nucleotide-Binding Domain and Stimulates ATP Hydrolysis in Both cis and trans Configurations. Alderson TR, Kim JH, Cai K, Frederick RO, Tonelli M, Markley JL MPP, Biochemistry (2014) 53:7999 (Details)(Pubmed ID: 25495500)(DOI: 10.1021/bi501490v) Times cited: 0
Specialized Hsp70 (HscA) interdomain linker binds to its nucleotide-binding domain and stimulates ATP hydrolysis in both cis and trans configurations. Alderson TR, Kim JH, Cai K, Frederick RO, Tonelli M, Markley JL MPP, Biochemistry (2014) 53:7148-59 (Details)(Pubmed ID: 25372495)(DOI: 10.1021/bi5010552) Times cited: 7
Crystal Structures of the F and pSLT Plasmid TraJ N-Terminal Regions Reveal Similar Homodimeric PAS Folds with Functional Interchangeability. Lu J, Wu R, Adkins JN, Joachimiak A, Glover JN MCSG+PCSEP, Biochemistry (2014) 53:5810-9 (Details)(Pubmed ID: 25148268)(DOI: 10.1021/bi500244m) Target: APC101575 PDB ID(s): 4EW7 Times cited: 0
pH-induced conformational change of IscU at low pH correlates with protonation/deprotonation of two conserved histidine residues. Dai Z, Kim JH, Tonelli M, Ali IK, Markley JL MPP, Biochemistry (2014) 53:5290-7 (Details)(Pubmed ID: 25055301)(DOI: 10.1021/bi500313t) Times cited: 4
Purification and biophysical characterization of the CapA membrane protein FTT0807 from Francisella tularensis. Martin-Garcia JM, Hansen DT, Zook J, Loskutov AV, Robida MD, Craciunescu FM, Sykes KF, Wachter RM, Fromme P, Allen JP MPID, Biochemistry (2014) 53:1958-70 (Details)(Pubmed ID: 24593131)(DOI: 10.1021/bi401644s) Times cited: 6
Structure and Function of Human DnaJ Homologue Subfamily A Member 1 (DNAJA1) and Its Relationship to Pancreatic Cancer. Stark JL, Mehla K, Chaika N, Acton TB, Xiao R, Singh PK, Montelione GT, Powers R NESG, Biochemistry (2014) 53:1360-72 (Details)(Pubmed ID: 24512202)(DOI: 10.1021/bi401329a) Times cited: 17
2013 (click to unfold)
Structural and Biochemical Characterization of the Bilin Lyase CpcS from Thermosynechococcus elongatus. Kronfel CM, Kuzin AP, Forouhar F, Biswas A, Su M, Lew S, Seetharaman J, Xiao R, Everett JK, Ma LC, Acton TB, Montelione GT, Hunt JF, Paul CE, Dragomani TM, Boutaghou MN, Cole RB, Riml C, Alvey RM, Bryant DA, Schluchter WM NESG, Biochemistry (2013) 52:8663-76 (Details)(Pubmed ID: 24215428)(DOI: 10.1021/bi401192z) Times cited: 8
Electron Transfer Mechanism of the Rieske Protein from Thermus thermophilus from Solution Nuclear Magnetic Resonance Investigations. Hsueh KL, Tonelli M, Cai K, Westler WM, Markley JL MPP, Biochemistry (2013) 52:2862-73 (Details)(Pubmed ID: 23480240)(DOI: 10.1021/bi400296c) Times cited: 5
Dynamic nuclear polarization study of inhibitor binding to the M2(18-60) proton transporter from influenza A. Andreas LB, Barnes AB, Corzilius B, Chou JJ, Miller EA, Caporini M, Rosay M, Griffin RG MPSbyNMR, Biochemistry (2013) 52:2774-82 (Details)(Pubmed ID: 23480101)(DOI: 10.1021/bi400150x) Times cited: 33
The quiet renaissance of protein nuclear magnetic resonance. Barrett PJ, Chen J, Cho MK, Kim JH, Lu Z, Mathew S, Peng D, Song Y, Van Horn WD, Zhuang T, Sönnichsen FD, Sanders CR MPSbyNMR, Biochemistry (2013) 52:1303-20 (Details)(Pubmed ID: 23368985)(DOI: 10.1021/bi4000436) Times cited: 23
Structure of the Bifunctional Acyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double-Hot-Dog Fold. Lohman JR, Bingman CA, Phillips GN, Shen B NATPRO+NatPro, Biochemistry (2013) 52:902-11 (Details)(Pubmed ID: 23320975)(DOI: 10.1021/bi301652y) PDB ID(s): 4HZN4HZO4HZP Times cited: 13
Solution NMR structure of yeast succinate dehydrogenase flavinylation factor Sdh5 reveals a putative Sdh1 binding site. Eletsky A, Jeong MY, Kim H, Lee HW, Xiao R, Pagliarini DJ, Prestegard JH, Winge DR, Montelione GT, Szyperski T MPP+NESG, Biochemistry (2012) 51:8475-7 (Details)(Pubmed ID: 23062074)(DOI: 10.1021/bi301171u) PDB ID(s): 2LM4 Times cited: 15
Crystal structure of the Marburg virus GP2 core domain in its postfusion conformation. Koellhoffer JF, Malashkevich VN, Harrison JS, Toro R, Bhosle RC, Chandran K, Almo SC, Lai JR NYSGRC, Biochemistry (2012) 51:7665-75 (Details)(Pubmed ID: 22935026)(DOI: 10.1021/bi300976m) Target: NYSGRC-028566 PDB ID(s): 4G2K Times cited: 24
Structure of a specialized acyl carrier protein essential for lipid a biosynthesis with very long-chain Fatty acids in open and closed conformations. Ramelot TA, Rossi P, Forouhar F, Lee HW, Yang Y, Ni S, Unser S, Lew S, Seetharaman J, Xiao R, Acton TB, Everett JK, Prestegard JH, Hunt JF, Montelione GT, Kennedy MA NESG, Biochemistry (2012) 51:7239-49 (Details)(Pubmed ID: 22876860)(DOI: 10.1021/bi300546b) Times cited: 5
Three-Dimensional Structure and Determinants of Stability of the Iron-Sulfur Cluster Scaffold Protein IscU from Escherichia coli. Hae Kim J, Tonelli M, Kim T, Markley JL MPP, Biochemistry (2012) 51:5557-5563 (Details)(Pubmed ID: 22734684)(DOI: 10.1021/bi300579p) PDB ID(s): 2L4X Times cited: 17
Solution NMR structure, backbone dynamics, and heme-binding properties of a novel cytochrome c maturation protein CcmE from Desulfovibrio vulgaris. Aramini JM, Hamilton K, Rossi P, Ertekin A, Lee HW, Lemak A, Wang H, Xiao R, Acton TB, Everett JK, Montelione GT NESG, Biochemistry (2012) 51:3705-7 (Details)(Pubmed ID: 22497251)(DOI: 10.1021/bi300457b) Times cited: 7
Structural analysis of HopPmaL reveals the presence of a second adaptor domain common to the HopAB family of Pseudomonas syringae type III effectors. Singer AU, Wu B, Yee A, Houliston S, Xu X, Cui H, Skarina T, Garcia M, Semesi A, Arrowsmith CH, Savchenko A NESG, Biochemistry (2012) 51:1-3 (Details)(Pubmed ID: 22191472)(DOI: 10.1021/bi2013883) Target: APC108254 PDB ID(s): 3SVI3TJY2LF32LF6 Times cited: 5
Catalytic mechanism and three-dimensional structure of adenine deaminase. Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley SK, Lindahl PA, Swaminathan S, Raushel FM EFI+NYSGXRC, Biochemistry (2011) 50:1917-27 (Details)(Pubmed ID: 21247091)(DOI: 10.1021/bi101788n) Target: NYSGXRC-9206a Times cited: 21
Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis. Ramelot TA, Smola MJ, Lee HW, Ciccosanti C, Hamilton K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Kennedy MA NESG, Biochemistry (2011) 50:1442-53 (Details)(Pubmed ID: 21235239)(DOI: 10.1021/bi101932s) Times cited: 6
2010 (click to unfold)
Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E. Zhang J, Sapienza PJ, Ke H, Chang A, Hengel SR, Wang H, Phillips GN, Lee AL CESG, Biochemistry (2010) 49:9280-91 (Details)(Pubmed ID: 20839809)(DOI: 10.1021/bi101131f) Times cited: 32
Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily . Xiang DF, Patskovsky Y, Xu C, Fedorov AA, Fedorov EV, Sisco AA, Sauder JM, Burley SK, Almo SC, Raushel FM NYSGXRC, Biochemistry (2010) 49:6791-803 (Details)(Pubmed ID: 20604542)(DOI: 10.1021/bi100897u) Target: 9260c PDB ID(s): 3MKV3FEQ3N2C Times cited: 10
Discovery and Structure Determination of the Orphan Enzyme Isoxanthopterin Deaminase . Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley SK, Swaminathan S, Raushel FM NYSGXRC, Biochemistry (2010) 49:4374-82 (Details)(Pubmed ID: 20415463)(DOI: 10.1021/bi100252s) Target: NYSGXRC-9339a PDB ID(s): 2PAJ Times cited: 13
Spectroscopic and computational characterization of substrate-bound mouse cysteine dioxygenase: nature of the ferrous and ferric cysteine adducts and mechanistic implications. Gardner JD, Pierce BS, Fox BG, Brunold TC CESG, Biochemistry (2010) 49:6033-41 (Details)(Pubmed ID: 20397631)(DOI: 10.1021/bi100189h) Times cited: 41
2009 (click to unfold)
Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis . Rakus JF, Kalyanaraman C, Fedorov AA, Fedorov EV, Mills-Groninger FP, Toro R, Bonanno J, Bain K, Sauder JM, Burley SK, Almo SC, Jacobson MP, Gerlt JA NYSGXRC, Biochemistry (2009) 48:11546-58 (Details)(Pubmed ID: 19883118)(DOI: 10.1021/bi901731c) Target: NYSGXRC-9375a PDB ID(s): 2OQY Times cited: 25
Structure and function of Bacillus subtilis YphP, a prokaryotic disulfide isomerase with a CXC catalytic motif . Derewenda U, Boczek T, Gorres KL, Yu M, Hung LW, Cooper D, Joachimiak A, Raines RT, Derewenda ZS MCSG, Biochemistry (2009) 48:8664-71 (Details)(Pubmed ID: 19653655)(DOI: 10.1021/bi900437z) Target: APC1446 PDB ID(s): 3FHK Times cited: 19
NMR structure and dynamics of the engineered fluorescein-binding lipocalin FluA reveal rigidification of beta-barrel and variable loops upon enthalpy-driven ligand binding. Mills JL, Liu G, Skerra A, Szyperski T NESG, Biochemistry (2009) 48:7411-9 (Details)(Pubmed ID: 19603796)(DOI: 10.1021/bi900535j) Times cited: 10
Functional Annotation of Two New Carboxypeptidases from the Amidohydrolase Superfamily of Enzymes. Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley SK, Swaminathan S, Raushel FM NYSGXRC, Biochemistry (2009) 48:4567-76 (Details)(Pubmed ID: 19358546)(DOI: 10.1021/bi900453u) PDB ID(s): 2QS8 Times cited: 9
Functional identification of incorrectly annotated prolidases from the amidohydrolase superfamily of enzymes. Xiang DF, Patskovsky Y, Xu C, Meyer AJ, Sauder JM, Burley SK, Almo SC, Raushel FM NYSGXRC, Biochemistry (2009) 48:3730-42 (Details)(Pubmed ID: 19281183)(DOI: 10.1021/bi900111q) PDB ID(s): 3BE73DUG Times cited: 12
Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes. Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley SK, Babbitt PC, Almo SC, Gerlt JA NYSGXRC, Biochemistry (2009) 48:1445-53 (Details)(Pubmed ID: 19220063)(DOI: 10.1021/bi802277h) PDB ID(s): 3DG33DG63DG73DGB3CT2 Times cited: 27
2008 (click to unfold)
Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation. Ando N, Barstow B, Baase WA, Fields A, Matthews BW, Gruner SM CHTSB, Biochemistry (2008) 47:11097-109 (Details)(Pubmed ID: 18816066)(DOI: 10.1021/bi801287m) Times cited: 40
Histidine 55 of tryptophan 2,3-dioxygenase is not an active site base but regulates catalysis by controlling substrate binding. Thackray SJ, Bruckmann C, Anderson JL, Campbell LP, Xiao R, Zhao L, Mowat CG, Forouhar F, Tong L, Chapman SK NESG, Biochemistry (2008) 47:10677-84 (Details)(Pubmed ID: 18783250)(DOI: 10.1021/bi801202a) PDB ID(s): 2BK93E08 Times cited: 31
Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad. Aramini JM, Rossi P, Huang YJ, Zhao L, Jiang M, Maglaqui M, Xiao R, Locke J, Nair R, Rost B, Acton TB, Inouye M, Montelione GT NESG, Biochemistry (2008) 47:9715-7 (Details)(Pubmed ID: 18715016)(DOI: 10.1021/bi8010779) PDB ID(s): 2K1G Times cited: 47
Structural characterization and reversal of the natural organophosphate resistance of a D-type esterase, Saccharomyces cerevisiae S-formylglutathione hydrolase. Legler PM, Kumaran D, Swaminathan S, Studier FW, Millard CB NYSGXRC, Biochemistry (2008) 47:9592-601 (Details)(Pubmed ID: 18707125)(DOI: 10.1021/bi8010016) PDB ID(s): 1PV1 Times cited: 15
Functional and structural characterization of four glutaminases from Escherichia coli and Bacillus subtilis. Brown G, Singer A, Proudfoot M, Skarina T, Kim Y, Chang C, Dementieva I, Kuznetsova E, Gonzalez CF, Joachimiak A, Savchenko A, Yakunin AF MCSG, Biochemistry (2008) 47:5724-35 (Details)(Pubmed ID: 18459799)(DOI: 10.1021/bi800097h) Target: APC1040 PDB ID(s): 2OSU1MKI Times cited: 46
Expression of 25 human ABC transporters in the yeast Pichia pastoris and characterization of the purified ABCC3 ATPase activity. Chloupková M, Pickert A, Lee JY, Souza S, Trinh YT, Connelly SM, Dumont ME, Dean M, Urbatsch IL CHTSB, Biochemistry (2007) 46(27):7992-8003 (Details)(Pubmed ID: 17569508)(DOI: 10.1021/bi700020m) Times cited: 35
PF0610, a novel winged helix-turn-helix variant possessing a rubredoxin-like Zn ribbon motif from the hyperthermophilic archaeon, Pyrococcus furiosus. Wang X, Lee HS, Sugar FJ, Jenney FE, Adams MW, Prestegard JH NESG, Biochemistry (2007) 46(3):752-61 (Details)(Pubmed ID: 17223696)(DOI: 10.1021/bi061870h) PDB ID(s): 2GMG Times cited: 5
2006 (click to unfold)
Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications. Song J, Lee MS, Carlberg I, Vener AV, Markley JL CESG, Biochemistry (2006) 45(51):15633-43 (Details)(Pubmed ID: 17176085)(DOI: 10.1021/bi062148m) PDB ID(s): 2FFT Times cited: 10
Structure of Arabidopsis thaliana At1g77540 protein, a minimal acetyltransferase from the COG2388 family. Tyler RC, Bitto E, Berndsen CE, Bingman CA, Singh S, Lee MS, Wesenberg GE, Denu JM, Phillips GN, Markley JL CESG, Biochemistry (2006) 45(48):14325-36 (Details)(Pubmed ID: 17128971)(DOI: 10.1021/bi0612059) PDB ID(s): 1XMT2EVN2IL4 Times cited: 6
Purification and ATP hydrolysis of the putative cholesterol transporters ABCG5 and ABCG8. Wang Z, Stalcup LD, Harvey BJ, Weber J, Chloupkova M, Dumont ME, Dean M, Urbatsch IL CHTSB, Biochemistry (2006) 45(32):9929-39 (Details)(Pubmed ID: 16893193)(DOI: 10.1021/bi0608055) Times cited: 25
The membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus binds the dipeptide GlyMet via side chain interactions. Williams WA, Zhang RG, Zhou M, Joachimiak G, Gornicki P, Missiakas D, Joachimiak A MCSG, Biochemistry (2004) 43(51):16193-202 (Details)(Pubmed ID: 15610013)(DOI: 10.1021/bi048877o) Target: APC009 PDB ID(s): 1P99 Times cited: 16
YfiT from Bacillus subtilis is a probable metal-dependent hydrolase with an unusual four-helix bundle topology Rajan SS, Yang X, Shuvalova L, Collart F, Anderson WF MCSG, Biochemistry (2004) 43(49):15472-9 (Details)(Pubmed ID: 15581359)(DOI: 10.1021/bi048665r) Target: APC1142 PDB ID(s): 1RXQ Times cited: 13
Crystal structure of the actin binding domain of the cyclase-associated protein. Dodatko T, Fedorov AA, Grynberg M, Patskovsky Y, Rozwarski DA, Jaroszewski L, Aronoff-Spencer E, Kondraskina E, Irving T, Godzik A, Almo SC NYSGXRC, Biochemistry (2004) 43(33):10628-41 (Details)(Pubmed ID: 15311924)(DOI: 10.1021/bi049071r) Times cited: 32
X-ray crystal structure of Desulfovibrio vulgaris rubrerythrin with zinc substituted into the [Fe(SCys)4] site and alternative diiron site structures. Jin S, Kurtz DM, Liu ZJ, Rose J, Wang BC SECSG, Biochemistry (2004) 43(11):3204-13 (Details)(Pubmed ID: 15023070)(DOI: 10.1021/bi0356193) Times cited: 11
Biophysical characterization of the complex between double-stranded RNA and the N-terminal domain of the NS1 protein from influenza A virus: evidence for a novel RNA-binding mode. Chien CY, Xu Y, Xiao R, Aramini JM, Sahasrabudhe PV, Krug RM, Montelione GT NESG, Biochemistry (2004) 43(7):1950-62 (Details)(Pubmed ID: 14967035)(DOI: 10.1021/bi030176o) Times cited: 83
Structural basis for the exocellulase activity of the cellobiohydrolase CbhA from Clostridium thermocellum. Schubot FD, Kataeva IA, Chang J, Shah AK, Ljungdahl LG, Rose JP, Wang BC SECSG, Biochemistry (2004) 43(5):1163-70 (Details)(Pubmed ID: 14756552)(DOI: 10.1021/bi030202i) Times cited: 45
2003 (click to unfold)
Crystal structure of NusA from Thermotoga maritima and functional implication of the N-terminal domain. Shin DH, Nguyen HH, Jancarik J, Yokota H, Kim R, Kim SH BSGC, Biochemistry (2003) 42(46):13429-37 (Details)(Pubmed ID: 14621988)(DOI: 10.1021/bi035118h) Times cited: 30
Violet bioluminescence and fast kinetics from W92F obelin: structure-based proposals for the bioluminescence triggering and the identification of the emitting species. Vysotski ES, Liu ZJ, Markova SV, Blinks JR, Deng L, Frank LA, Herko M, Malikova NP, Rose JP, Wang BC, Lee J SECSG, Biochemistry (2003) 42(20):6013-24 (Details)(Pubmed ID: 12755603)(DOI: 10.1021/bi027258h) Times cited: 43
The structure of the carboxyl terminus of striated alpha-tropomyosin in solution reveals an unusual parallel arrangement of interacting alpha-helices. Greenfield NJ, Swapna GV, Huang Y, Palm T, Graboski S, Montelione GT, Hitchcock-DeGregori SE NESG, Biochemistry (2003) 42(3):614-9 (Details)(Pubmed ID: 12534273)(DOI: 10.1021/bi026989e) PDB ID(s): 1MV4 Times cited: 45
Multicopy crystallographic refinement of a relaxed glutamine synthetase from Mycobacterium tuberculosis highlights flexible loops in the enzymatic mechanism and its regulation. Gill HS, Pfluegl GM, Eisenberg D TB, Biochemistry (2002) 41(31):9863-72 (Details)(Pubmed ID: 12146952)(DOI: 10.1021/bi020254s) Times cited: 56
Identification of a novel archaebacterial thioredoxin: determination of function through structure. Bhattacharyya S, Habibi-Nazhad B, Amegbey G, Slupsky CM, Yee A, Arrowsmith C, Wishart DS NESG, Biochemistry (2002) 41(15):4760-70 (Details)(Pubmed ID: 11939770)(DOI: 10.1021/bi0115176) PDB ID(s): 1ILO Times cited: 22
Structural basis for the substrate specificity of the feruloyl esterase domain of the cellulosomal xylanase Z from Clostridium thermocellum. Schubot FD, Kataeva IA, Blum DL, Shah AK, Ljungdahl LG, Rose JP, Wang BC SECSG, Biochemistry (2001) 40(42):12524-32 (Details)(Pubmed ID: 11601976)(DOI: 10.1021/bi011391c) PDB ID(s): 1JJF Times cited: 59
2000 (click to unfold)
Preparation, characterization, and the crystal structure of the inhibitor ZK-807834 (CI-1031) complexed with factor Xa. Adler M, Davey DD, Phillips GB, Kim SH, Jancarik J, Rumennik G, Light DR, Whitlow M BSGC, Biochemistry (2000) 39(41):12534-42 (Details)(Pubmed ID: 11027132)(DOI: 10.1021/bi001477q) Times cited: 96
Total number of citations for publications: 1664 Average number of citations per publication (): 23.4