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Publications for Northeast Structural Genomics Consortium
| Total Publications | 405 |
|---|---|
| Publications with >5 Citations | 264 |
| Structural Publications | 163 |
| Methodological and Other Publications | 242 |
| Total Citations | 11633 |
| Avg. Citations (Structural) | 13.4 |
| Avg. Citations (Methodological and Other) | 39.1 |
| Total Impact | 2,190.0 |
More Northeast Structural Genomics Consortium statistics here.
Structural Publications
- Human cyclin dependent kinase 2 associated protein 1 is dimeric in its disulfide-reduced state, with natively disordered N-terminal region.
Ertekin A, Aramini JM, Rossi P, Leonard PG, Janjua H, Xiao R, Maglaqui M, Lee HW, Prestegard JH, Montelione GT
Journal of Biological Chemistry (2012) , undefined,
(Details) (Pub Med ID: 22427660)
Times cited: no data - Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus.
Snyder DA, Aramini JM, Yu B, Huang YJ, Xiao R, Cort JR, Shastry R, Ma LC, Liu J, Rost B, Acton TB, Kennedy MA, Montelione GT
Proteins (2012) , undefined,
(Details) (Pub Med ID: 22422653)
Times cited: no data - Solution NMR structures reveal unique homodimer formation by a winged helix-turn-helix motif and provide first structures for protein domain family PF10771.
Eletsky A, Petrey D, Zhang QC, Lee HW, Acton TB, Xiao R, Everett JK, Prestegard JH, Honig B, Montelione GT, Szyperski T
Journal of Structural and Functional Genomics (2012) , 13, 1-7
(Details) (Pub Med ID: 22223187)
Times cited: 0 - Solution NMR structures reveal a distinct architecture and provide first structures for protein domain family PF04536.
Eletsky A, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T
Journal of Structural and Functional Genomics (2012) , 13, 9-14
(Details) (Pub Med ID: 22198206)
Times cited: 0 - Structural analysis of HopPmaL reveals the presence of a second adaptor domain common to the HopAB family of Pseudomonas syringae type III effectors.
Singer AU, Wu B, Yee A, Houliston S, Xu X, Cui H, Skarina T, Garcia M, Semesi A, Arrowsmith CH, Savchenko A
Biochemistry (2012) , 51, 1-3
(Details) (Pub Med ID: 22191472)
Target: APC108254
PDB ID(s): 3SVI 3TJY 2LF3 2LF6
Times cited: 0 - Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification.
Pastore C, Topalidou I, Forouhar F, Yan AC, Levy M, Hunt JF
Journal of Biological Chemistry (2012) , 287, 2130-43
(Details) (Pub Med ID: 22065580)
PDB ID(s): 3THP 3THT
Times cited: 0 - NMR structure of bacterial lipoprotein YxeF from Bacillus subtilis reveals a calycin fold and distant homology with the lipocalin Blc from Escherichia coli
Wu Y, Punta M, Xiao R, Acton TB, Sathyamoorthy B, Dey F, Fischer M, Skerra A, Rost B, Montelione GT, Szyperski T
PLoS ONE (2012) , in press,
(Details)
Times cited: no data - Solution NMR structure, backbone dynamics, and heme-binding properties of a novel cytochrome c maturation protein CcmE from Desulfovibrio vulgaris
Aramini JM, Hamilton K, Rossi P, Ertekin A, Lee HW, Lemak A, Wang H, Xiao R, Acton TB, Everett JK, Montelione GT
Biochemistry (2012) , in press,
(Details)
Times cited: no data - Structural conservation of the myoviridae phage tail sheath protein fold.
Aksyuk AA, Kurochkina LP, Fokine A, Forouhar F, Mesyanzhinov VV, Tong L, Rossmann MG
Structure (2011) , 19, 1885-94
(Details) (Pub Med ID: 22153511)
Times cited: 0 - The 1.7 Å resolution structure of At2g44920, a pentapeptide-repeat protein in the thylakoid lumen of Arabidopsis thaliana.
Ni S, McGookey ME, Tinch SL, Jones AN, Jayaraman S, Tong L, Kennedy MA
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2011) , 67, 1480-4
(Details) (Pub Med ID: 22139148)
Times cited: 0 - Solution NMR structure of Asl3597 from Nostoc sp. PCC7120, the first structure from protein domain family PF12095, reveals a novel fold.
Feldmann EA, Ramelot TA, Yang Y, Xiao R, Acton TB, Everett JK, Montelione GT, Kennedy MA
Proteins (2011) , undefined,
(Details) (Pub Med ID: 22113821)
Times cited: no data - A large conformational change in the putative ATP pyrophosphatase PF0828 induced by ATP binding.
Forouhar F, Saadat N, Hussain M, Seetharaman J, Lee I, Janjua H, Xiao R, Shastry R, Acton TB, Montelione GT, Tong L
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2011) , 67, 1323-7
(Details) (Pub Med ID: 22102225)
Times cited: 0 - Disorder-to-order transition underlies the structural basis for the assembly of a transcriptionally active PGC-1α/ERRγ complex.
Devarakonda S, Gupta K, Chalmers MJ, Hunt JF, Griffin PR, Van Duyne GD, Spiegelman BM
Proceedings of the National Academy of Sciences of the United States of America (2011) , 108, 18678-83
(Details) (Pub Med ID: 22049338)
Times cited: 0 - Human Retinoblastoma Binding Protein 9, a Serine Hydrolase Implicated in Pancreatic Cancers.
Vorobiev SM, Huang YJ, Seetharaman J, Xiao R, Acton TB, Montelione GT, Tong L
Accounts of Chemical Research (2011) , undefined,
(Details) (Pub Med ID: 21933118)
Times cited: no data - Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic acid-binding function.
Aramini JM, Rossi P, Fischer M, Xiao R, Acton TB, Montelione GT
Proteins (2011) , 79, 2988-91
(Details) (Pub Med ID: 21905121)
Times cited: 0 - Solution NMR structure of Dsy0195 homodimer from Desulfitobacterium hafniense: first structure representative of the YabP domain family of proteins involved in spore coat assembly.
Yang Y, Ramelot TA, Cort JR, Wang H, Ciccosanti C, Jiang M, Janjua H, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA
Journal of Structural and Functional Genomics (2011) , 12, 175-9
(Details) (Pub Med ID: 21904870)
Times cited: 0 - Novel C-terminal Motif within Sec7 Domain of Guanine Nucleotide Exchange Factors Regulates ADP-ribosylation Factor (ARF) Binding and Activation.
Lowery J, Szul T, Seetharaman J, Jian X, Su M, Forouhar F, Xiao R, Acton TB, Montelione GT, Lin H, Wright JW, Lee E, Holloway ZG, Randazzo PA, Tong L, Sztul E
Journal of Biological Chemistry (2011) , 286, 36898-906
(Details) (Pub Med ID: 21828055)
Times cited: 0 - Structural basis for the sequence-specific recognition of human ISG15 by the NS1 protein of influenza B virus.
Guan R, Ma LC, Leonard PG, Amer BR, Sridharan H, Zhao C, Krug RM, Montelione GT
Proceedings of the National Academy of Sciences of the United States of America (2011) , 108, 13468-73
(Details) (Pub Med ID: 21808041)Times cited: 2 - Solution NMR structure of MED25(391-543) comprising the activator-interacting domain (ACID) of human mediator subunit 25.
Eletsky A, Ruyechan WT, Xiao R, Acton TB, Montelione GT, Szyperski T
Journal of Structural and Functional Genomics (2011) , 12, 159-66
(Details) (Pub Med ID: 21785987)
Times cited: 0 - UNC119 is required for G protein trafficking in sensory neurons.
Zhang H, Constantine R, Vorobiev S, Chen Y, Seetharaman J, Huang YJ, Xiao R, Montelione GT, Gerstner CD, Davis MW, Inana G, Whitby FG, Jorgensen EM, Hill CP, Tong L, Baehr W
Nature neuroscience (2011) , 14, 874-80
(Details) (Pub Med ID: 21642972)Times cited: 11 - Structure of the guanylyltransferase domain of human mRNA capping enzyme.
Chu C, Das K, Tyminski JR, Bauman JD, Guan R, Qiu W, Montelione GT, Arnold E, Shatkin AJ
Proceedings of the National Academy of Sciences of the United States of America (2011) , 108, 10104-8
(Details) (Pub Med ID: 21636784)Times cited: 3 - Dimer Interface of the Effector Domain of Non-structural Protein 1 from Influenza A Virus: AN INTERFACE WITH MULTIPLE FUNCTIONS.
Aramini JM, Ma LC, Zhou L, Schauder CM, Hamilton K, Amer BR, Mack TR, Lee HW, Ciccosanti CT, Zhao L, Xiao R, Krug RM, Montelione GT
Journal of Biological Chemistry (2011) , 286, 26050-60
(Details) (Pub Med ID: 21622573)Times cited: 1 - Novel anti-Prelog stereospecific carbonyl reductases from Candida parapsilosis for asymmetric reduction of prochiral ketones.
Nie Y, Xiao R, Xu Y, Montelione GT
Organic & biomolecular chemistry (2011) , 9, 4070-8
(Details) (Pub Med ID: 21505708)Times cited: 1 - Synthesis and evaluation of quinoxaline derivatives as potential influenza NS1A protein inhibitors.
You L, Cho EJ, Leavitt J, Ma LC, Montelione GT, Anslyn EV, Krug RM, Ellington A, Robertus JD
Accounts of Chemical Research (2011) , 21, 3007-11
(Details) (Pub Med ID: 21478016)Times cited: 2 - Interferon-inducible protein 16: insight into the interaction with tumor suppressor p53.
Liao JC, Lam R, Brazda V, Duan S, Ravichandran M, Ma J, Xiao T, Tempel W, Zuo X, Wang YX, Chirgadze NY, Arrowsmith CH
Structure (2011) , 19, 418-29
(Details) (Pub Med ID: 21397192)Times cited: 5 - Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis.
Ramelot TA, Smola MJ, Lee HW, Ciccosanti C, Hamilton K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Kennedy MA
Biochemistry (2011) , 50, 1442-53
(Details) (Pub Med ID: 21235239)
Times cited: 0 - Structures of domains I and IV from YbbR are representative of a widely distributed protein family.
Barb AW, Cort JR, Seetharaman J, Lew S, Lee HW, Acton T, Xiao R, Kennedy MA, Tong L, Montelione GT, Prestegard JH
Protein Science (2011) , 20, 396-405
(Details) (Pub Med ID: 21154411)
Times cited: 0 - Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold.
Mani R, Vorobiev S, Swapna GV, Neely H, Janjua H, Ciccosanti C, Xiao R, Acton TB, Everett JK, Hunt J, Montelione GT
Journal of Structural and Functional Genomics (2011) , 12, 27-32
(Details) (Pub Med ID: 21153711)
Times cited: 0 - Solution NMR structure of photosystem II reaction center protein Psb28 from Synechocystis sp. Strain PCC 6803.
Yang Y, Ramelot TA, Cort JR, Wang D, Ciccosanti C, Hamilton K, Nair R, Rost B, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA
Proteins (2011) , 79, 340-4
(Details) (Pub Med ID: 21058299)Times cited: 2 - Solution NMR structure of the plasmid-encoded fimbriae regulatory protein PefI from Salmonella enterica serovar Typhimurium.
Aramini JM, Rossi P, Cort JR, Ma LC, Xiao R, Acton TB, Montelione GT
Proteins (2011) , 79, 335-9
(Details) (Pub Med ID: 20979070)
Times cited: 0 - Structure of the iSH2 domain of human phosphatidylinositol 3-kinase p85β subunit reveals conformational plasticity in the interhelical turn region.
Schauder C, Ma LC, Krug RM, Montelione GT, Guan R
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1567-71
(Details) (Pub Med ID: 21139197)
Times cited: 0 - Structures of bacterial biosynthetic arginine decarboxylases.
Forouhar F, Lew S, Seetharaman J, Xiao R, Acton TB, Montelione GT, Tong L
Acta Crystallographica Section F: Structural Biology and Crystallization Communications (2010) , 66, 1562-6
(Details) (Pub Med ID: 21139196)
Times cited: 0 - S-Adenosylmethionine-dependent radical-based modification of biological macromolecules.
Atta M, Mulliez E, Arragain S, Forouhar F, Hunt JF, Fontecave M
Current Opinion in Structural Biology (2010) , 20, 684-92
(Details) (Pub Med ID: 20951571)Times cited: 7 - Solution structure and function of YndB, an AHSA1 protein from Bacillus subtilis.
Stark JL, Mercier KA, Mueller GA, Acton TB, Xiao R, Montelione GT, Powers R
Proteins (2010) , 78, 3328-40
(Details) (Pub Med ID: 20818668)Times cited: 1 - Fully automated high-quality NMR structure determination of small (2)H-enriched proteins.
Tang Y, Schneider WM, Shen Y, Raman S, Inouye M, Baker D, Roth MJ, Montelione GT
Journal of Structural and Functional Genomics (2010) , 11, 223-32
(Details) (Pub Med ID: 20734145)Times cited: 4 - Crystal structures of Phd-Doc, HigA, and YeeU establish multiple evolutionary links between microbial growth-regulating toxin-antitoxin systems.
Arbing MA, Handelman SK, Kuzin AP, Verdon G, Wang C, Su M, Rothenbacher FP, Abashidze M, Liu M, Hurley JM, Xiao R, Acton T, Inouye M, Montelione GT, Woychik NA, Hunt JF
Structure (2010) , 18, 996-1010
(Details) (Pub Med ID: 20696400)Times cited: 4 - Methyl esterase 1 (StMES1) is required for systemic acquired resistance in potato.
Manosalva PM, Park SW, Forouhar F, Tong L, Fry WE, Klessig DF
Molecular plant-microbe interactions : MPMI (2010) , 23, 1151-63
(Details) (Pub Med ID: 20687805)Times cited: 4 - Solution NMR structure of Lin0431 protein from Listeria innocua reveals high structural similarity with domain II of bacterial transcription antitermination protein NusG.
Tang Y, Xiao R, Ciccosanti C, Janjua H, Lee DY, Everett JK, Swapna GV, Acton TB, Rost B, Montelione GT
Proteins (2010) , 78, 2563-8
(Details) (Pub Med ID: 20602357)Times cited: 1 - Three-dimensional structure of the weakly associated protein homodimer SeR13 using RDCs and paramagnetic surface mapping.
Lee HW, Wylie G, Bansal S, Wang X, Barb AW, Macnaughtan MA, Ertekin A, Montelione GT, Prestegard JH
Protein Science (2010) , 19, 1673-85
(Details) (Pub Med ID: 20589905)Times cited: 3 - Identification of eukaryotic and prokaryotic methylthiotransferase for biosynthesis of 2-methylthio-N6-threonylcarbamoyladenosine in tRNA.
Arragain S, Handelman SK, Forouhar F, Wei FY, Tomizawa K, Hunt JF, Douki T, Fontecave M, Mulliez E, Atta M
Journal of Biological Chemistry (2010) , 285, 28425-33
(Details) (Pub Med ID: 20584901)Times cited: 6 - Computational design of a PAK1 binding protein.
Jha RK, Leaver-Fay A, Yin S, Wu Y, Butterfoss GL, Szyperski T, Dokholyan NV, Kuhlman B
Journal of Molecular Biology (2010) , 400, 257-70
(Details) (Pub Med ID: 20460129)Times cited: 12 - Solution NMR structure of the ARID domain of human AT-rich interactive domain-containing protein 3A: a human cancer protein interaction network target.
Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT
Proteins (2010) , 78, 2170-5
(Details) (Pub Med ID: 20455271)Times cited: 1 - Structural basis of O6-alkylguanine recognition by a bacterial alkyltransferase-like DNA repair protein.
Aramini JM, Tubbs JL, Kanugula S, Rossi P, Ertekin A, Maglaqui M, Hamilton K, Ciccosanti CT, Jiang M, Xiao R, Soong TT, Rost B, Acton TB, Everett JK, Pegg AE, Tainer JA, Montelione GT
Journal of Biological Chemistry (2010) , 285, 13736-41
(Details) (Pub Med ID: 20212037)Times cited: 5 - NMR structure of F-actin-binding domain of Arg/Abl2 from Homo sapiens.
Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT
Proteins (2010) , 78, 1326-30
(Details) (Pub Med ID: 20077570)
PDB ID(s): 2KK1Times cited: 1 - Mapping of ligand-binding cavities in proteins.
Andersson CD, Chen BY, Linusson A
Proteins (2010) , 78, 1408-22
(Details) (Pub Med ID: 20034113)
Times cited: no data - Escherichia coli RNase R has dual activities, helicase and RNase.
Awano N, Rajagopal V, Arbing M, Patel S, Hunt J, Inouye M, Phadtare S
Journal of Bacteriology (2010) , 192, 1344-52
(Details) (Pub Med ID: 20023028)Times cited: 7 - Post-translational modification of ribosomal proteins: structural and functional characterization of RimO from Thermotoga maritima, a radical S-adenosylmethionine methylthiotransferase.
Arragain S, Garcia-Serres R, Blondin G, Douki T, Clemancey M, Latour JM, Forouhar F, Neely H, Montelione GT, Hunt JF, Mulliez E, Fontecave M, Atta M
Journal of Biological Chemistry (2010) , 285, 5792-801
(Details) (Pub Med ID: 20007320)
PDB ID(s): 1OCT 2FB2 1K3R 1UWVTimes cited: 7 - Solution NMR structures of proteins VPA0419 from Vibrio parahaemolyticus and yiiS from Shigella flexneri provide structural coverage for protein domain family PFAM 04175.
Singarapu KK, Mills JL, Xiao R, Acton T, Punta M, Fischer M, Honig B, Rost B, Montelione GT, Szyperski T
Proteins (2010) , 78, 779-84
(Details) (Pub Med ID: 19927321)
PDB ID(s): 2K3I 2JZ5
Times cited: 0 - Making, breaking and sensing of cyclic di-GMP: Structural aspects
Kim D, Hunt JF, Schirmer T,
The Second Messenger Cyclic Diguanylate (2010) , Am Soc Micro Bio Press, Washington DC
(Details)
PDB ID(s): 3IGN 2RDE 2V0N 1W25
Times cited: no data - (1)H, (13)C, and (15)N NMR assignments for the Bacillus subtilis yndB START domain.
Mercier KA, Mueller GA, Acton TB, Xiao R, Montelione GT, Powers R
Biomolecular NMR Assignments (2009) , 3, 191-4
(Details) (Pub Med ID: 19888688)
PDB ID(s): 2KEWTimes cited: 1 - Structural relationships among proteins with different global topologies and their implications for function annotation strategies.
Petrey D, Fischer M, Honig B
Proceedings of the National Academy of Sciences of the United States of America (2009) , 106, 17377-82
(Details) (Pub Med ID: 19805138)
PDB ID(s): 1F51 1EB3 1Y4T 2ACE 3BTP 2ACW 2I2S 1KJ1 2BT9 1RCU 1WQ4 1VGR 2IZ6Times cited: 23 - NMR structure of protein YvyC from Bacillus subtilis reveals unexpected structural similarity between two PFAM families.
Eletsky A, Sukumaran DK, Xiao R, Acton TB, Rost B, Montelione GT, Szyperski T
Proteins (2009) , 76, 1037-41
(Details) (Pub Med ID: 19455708)
PDB ID(s): 2HC5Times cited: 1 - Analysis of the varicella-zoster virus IE62 N-terminal acidic transactivating domain and its interaction with the human mediator complex.
Yamamoto S, Eletsky A, Szyperski T, Hay J, Ruyechan WT
Journal of Virology (2009) , 83, 6300-5
(Details) (Pub Med ID: 19357160)Times cited: 9 - Structural genomics reveals EVE as a new ASCH/PUA-related domain.
Bertonati C, Punta M, Fischer M, Yachdav G, Forouhar F, Zhou W, Kuzin AP, Seetharaman J, Abashidze M, Ramelot TA, Kennedy MA, Cort JR, Belachew A, Hunt JF, Tong L, Montelione GT, Rost B
Proteins (2009) , 75, 760-73
(Details) (Pub Med ID: 19191354)Times cited: 1 - Two poplar methyl salicylate esterases display comparable biochemical properties but divergent expression patterns.
Zhao N, Guan J, Forouhar F, Tschaplinski TJ, Cheng ZM, Tong L, Chen F
Phytochemistry (2009) , 70, 37-44
(Details) (Pub Med ID: 19136124)
PDB ID(s): 1Y7ITimes cited: 8 - NMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway.
Liu G, Forouhar F, Eletsky A, Atreya HS, Aramini JM, Xiao R, Huang YJ, Abashidze M, Seetharaman J, Liu J, Rost B, Acton T, Montelione GT, Hunt JF, Szyperski T
Journal of Structural and Functional Genomics (2009) , 10, 127-36
(Details) (Pub Med ID: 19101823)Times cited: 1 - Crystal structure of human retinoblastoma binding protein 9.
Vorobiev SM, Su M, Seetharaman J, Huang YJ, Chen CX, Maglaqui M, Janjua H, Proudfoot M, Yakunin A, Xiao R, Acton TB, Montelione GT, Tong L
Proteins (2009) , 74, 526-9
(Details) (Pub Med ID: 19004028)
PDB ID(s): 2QS9Times cited: 5 - Structural elucidation of the Cys-His-Glu-Asn proteolytic relay in the secreted CHAP domain enzyme from the human pathogen Staphylococcus saprophyticus.
Rossi P, Aramini JM, Xiao R, Chen CX, Nwosu C, Owens LA, Maglaqui M, Nair R, Fischer M, Acton TB, Honig B, Rost B, Montelione GT
Proteins (2009) , 74, 515-519
(Details) (Pub Med ID: 18951393)
PDB ID(s): 2K3ATimes cited: 4 - Snapshots of Dynamics in Synthesizing N6-Isopentenyladenosine at the tRNA Anticodon
Chimnaronk S, Forouhar F, Sakai J, Yao M, Tron CM, Atta M, Fontecave M, Hunt JF, Tanaka I
Biochemistry (2009) , 48, 5057-5065
(Details)
PDB ID(s): 2ZM5 2ZXU 2QGN 3EXATimes cited: 11 - Molecular basis of Pirh2-mediated p53 ubiquitylation.
Sheng Y, Laister RC, Lemak A, Wu B, Tai E, Duan S, Lukin J, Sunnerhagen M, Srisailam S, Karra M, Benchimol S, Arrowsmith CH
Nature Structural & Molecular Biology (2008) , 15, 1334-42
(Details) (Pub Med ID: 19043414)Times cited: 24 - Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical thioredoxin active site sequence motif.
Parish D, Benach J, Liu G, Singarapu KK, Xiao R, Acton T, Su M, Bansal S, Prestegard JH, Hunt J, Montelione GT, Szyperski T
Journal of Structural and Functional Genomics (2008) , 9, 41-9
(Details) (Pub Med ID: 19039680)
PDB ID(s): 2JZT 2HFDTimes cited: 5 - Histidine 55 of tryptophan 2,3-dioxygenase is not an active site base but regulates catalysis by controlling substrate binding.
Thackray SJ, Bruckmann C, Anderson JL, Campbell LP, Xiao R, Zhao L, Mowat CG, Forouhar F, Tong L, Chapman SK
Biochemistry (2008) , 47, 10677-84
(Details) (Pub Med ID: 18783250)
PDB ID(s): 2BK9 3E08Times cited: 13 - Structural basis for suppression of a host antiviral response by influenza A virus.
Das K, Ma LC, Xiao R, Radvansky B, Aramini J, Zhao L, Marklund J, Kuo RL, Twu KY, Arnold E, Krug RM, Montelione GT
Proceedings of the National Academy of Sciences of the United States of America (2008) , 105, 13093-8
(Details) (Pub Med ID: 18725644)
PDB ID(s): 2RHKTimes cited: 52 - Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad.
Aramini JM, Rossi P, Huang YJ, Zhao L, Jiang M, Maglaqui M, Xiao R, Locke J, Nair R, Rost B, Acton TB, Inouye M, Montelione GT
Biochemistry (2008) , 47, 9715-7
(Details) (Pub Med ID: 18715016)
PDB ID(s): 2K1GTimes cited: 9 - Structure of an acetyl-CoA binding protein from Staphylococcus aureus representing a novel subfamily of GCN5-related N-acetyltransferase-like proteins.
Cort JR, Ramelot TA, Murray D, Acton TB, Ma LC, Xiao R, Montelione GT, Kennedy MA
Journal of Structural and Functional Genomics (2008) , 9, 7-20
(Details) (Pub Med ID: 18709443)
PDB ID(s): 1R57 2H5MTimes cited: 2 - Allochromatium vinosum DsrC: solution-state NMR structure, redox properties, and interaction with DsrEFH, a protein essential for purple sulfur bacterial sulfur oxidation.
Cort JR, Selan U, Schulte A, Grimm F, Kennedy MA, Dahl C
Journal of Molecular Biology (2008) , 382, 692-707
(Details) (Pub Med ID: 18656485)
PDB ID(s): 1YX3Times cited: 11 - Structure and dynamics of the P7 protein from the bacteriophage phi 12.
Eryilmaz E, Benach J, Su M, Seetharaman J, Dutta K, Wei H, Gottlieb P, Hunt JF, Ghose R
Journal of Molecular Biology (2008) , 382, 402-22
(Details) (Pub Med ID: 18647606)
PDB ID(s): 2Q82Times cited: 3 - Solution structure of Alg13: the sugar donor subunit of a yeast N-acetylglucosamine transferase.
Wang X, Weldeghiorghis T, Zhang G, Imperiali B, Prestegard JH
Structure (2008) , 16, 965-75
(Details) (Pub Med ID: 18547528)
PDB ID(s): 2JZCTimes cited: 10 - Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis.
Aramini JM, Sharma S, Huang YJ, Swapna GV, Ho CK, Shetty K, Cunningham K, Ma LC, Zhao L, Owens LA, Jiang M, Xiao R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT
Proteins (2008) , 72, 526-30
(Details) (Pub Med ID: 18431750)
PDB ID(s): 2HEP 2JVDTimes cited: 5 - Molecular insights into the biosynthesis of the F420 coenzyme.
Forouhar F, Abashidze M, Xu H, Grochowski LL, Seetharaman J, Hussain M, Kuzin A, Chen Y, Zhou W, Xiao R, Acton TB, Montelione GT, Galinier A, White RH, Tong L
Journal of Biological Chemistry (2008) , 283, 11832-40
(Details) (Pub Med ID: 18252724)
PDB ID(s): 3C3D 3C3E 3CGWTimes cited: 8 - NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors.
Singarapu KK, Xiao R, Acton T, Rost B, Montelione GT, Szyperski T
Proteins (2008) , 71, 1027-31
(Details) (Pub Med ID: 18247350)
PDB ID(s): 2JVATimes cited: 1 - The solution structure of ribosomal protein S17E from Methanobacterium thermoautotrophicum: a structural homolog of the FF domain.
Wu B, Yee A, Huang YJ, Ramelot TA, Cort JR, Semesi A, Jung JW, Lee W, Montelione GT, Kennedy MA, Arrowsmith CH
Protein Science (2008) , 17, 583-8
(Details) (Pub Med ID: 18218711)
PDB ID(s): 1RQ6Times cited: 1 - Solution structure of ribosomal protein L40E, a unique C4 zinc finger protein encoded by archaeon Sulfolobus solfataricus.
Wu B, Lukin J, Yee A, Lemak A, Semesi A, Ramelot TA, Kennedy MA, Arrowsmith CH
Protein Science (2008) , 17, 589-96
(Details) (Pub Med ID: 18218710)
PDB ID(s): 2AYJTimes cited: 1 - NMR structure of protein Cgl2762 from Corynebacterium glutamicum implicated in DNA transposition reveals a helix-turn-helix motif attached to a flexibly disordered leucine zipper.
Singarapu KK, Xiao R, Sukumaran DK, Acton T, Montelione GT, Szyperski T
Proteins (2008) , 70, 1650-4
(Details) (Pub Med ID: 18175328)
PDB ID(s): 2JN6
Times cited: 0 - The structural basis of cyclic diguanylate signal transduction by PilZ domains.
Benach J, Swaminathan SS, Tamayo R, Handelman SK, Folta-Stogniew E, Ramos JE, Forouhar F, Neely H, Seetharaman J, Camilli A, Hunt JF
EMBO Journal (2007) , 26, 5153-66
(Details) (Pub Med ID: 18034161)
PDB ID(s): 1YWU 1YLN 2GJG 1W25Times cited: 52 - Structural and functional studies of the abundant tegument protein ORF52 from murine gammaherpesvirus 68.
Benach J, Wang L, Chen Y, Ho CK, Lee S, Seetharaman J, Xiao R, Acton TB, Montelione GT, Deng H, Sun R, Tong L
Journal of Biological Chemistry (2007) , 282, 31534-41
(Details) (Pub Med ID: 17699518)
PDB ID(s): 2OA5Times cited: 1 - Functional insights from structural genomics.
Forouhar F, Kuzin A, Seetharaman J, Lee I, Zhou W, Abashidze M, Chen Y, Yong W, Janjua H, Fang Y, Wang D, Cunningham K, Xiao R, Acton TB, Pichersky E, Klessig DF, Porter CW, Montelione GT, Tong L
Journal of Structural and Functional Genomics (2007) , 8, 37-44
(Details) (Pub Med ID: 17588214)
PDB ID(s): 1RTY 1SQS 1TM0 1Z6P 2HD3 2NV4 2OYSTimes cited: 10 - Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family.
Aramini JM, Huang YJ, Swapna GV, Cort JR, Rajan PK, Xiao R, Shastry R, Acton TB, Liu J, Rost B, Kennedy MA, Montelione GT
Proteins (2007) , 68(3), 789-95
(Details) (Pub Med ID: 17523190)
PDB ID(s): 1XHSTimes cited: 2 - Conserved surface features form the double-stranded RNA binding site of non-structural protein 1 (NS1) from influenza A and B viruses.
Yin C, Khan JA, Swapna GV, Ertekin A, Krug RM, Tong L, Montelione GT
Journal of Biological Chemistry (2007) , 282(28), 20584-92
(Details) (Pub Med ID: 17475623)
PDB ID(s): 1XEQ 1NS1Times cited: 40 - Nicotinamide adenine dinucleotide metabolism as an attractive target for drug discovery.
Khan JA, Forouhar F, Tao X, Tong L
Expert opinion on therapeutic targets (2007) , 11, 695-705
(Details) (Pub Med ID: 17465726)
PDB ID(s): 2QL6 2QG6Times cited: 36 - Crystal structure of AGR_C_4470p from Agrobacterium tumefaciens.
Vorobiev SM, Neely H, Seetharaman J, Ma LC, Xiao R, Acton TB, Montelione GT, Tong L
Protein Science (2007) , 16(3), 535-8
(Details) (Pub Med ID: 17322535)
PDB ID(s): 2HQVTimes cited: 1 - The conserved CPH domains of Cul7 and PARC are protein-protein interaction modules that bind the tetramerization domain of p53.
Kaustov L, Lukin J, Lemak A, Duan S, Ho M, Doherty R, Penn LZ, Arrowsmith CH
Journal of Biological Chemistry (2007) , 282(15), 11300-7
(Details) (Pub Med ID: 17298945)
PDB ID(s): 2JNGTimes cited: 18 - NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif
Singarapu KK, Liu G, Xiao R, Bertonati C, Honig B, Montelione GT, Szyperski T
Proteins (2007) , 67(2), 501-4
(Details) (Pub Med ID: 17266124)
PDB ID(s): 2FKITimes cited: 2 - PF0610, a novel winged helix-turn-helix variant possessing a rubredoxin-like Zn ribbon motif from the hyperthermophilic archaeon, Pyrococcus furiosus.
Wang X, Lee HS, Sugar FJ, Jenney FE, Adams MW, Prestegard JH
Biochemistry (2007) , 46(3), 752-61
(Details) (Pub Med ID: 17223696)
PDB ID(s): 2GMGTimes cited: 2 - Molecular insights into substrate recognition and catalysis by tryptophan 2,3-dioxygenase.
Forouhar F, Anderson JL, Mowat CG, Vorobiev SM, Hussain A, Abashidze M, Bruckmann C, Thackray SJ, Seetharaman J, Tucker T, Xiao R, Ma LC, Zhao L, Acton TB, Montelione GT, Chapman SK, Tong L
Proceedings of the National Academy of Sciences of the United States of America (2007) , 104(2), 473-8
(Details) (Pub Med ID: 17197414)
PDB ID(s): 2NWB 2NW7 2NW8 2NW9Times cited: 53 - NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein.
Ramelot TA, Yee A, Cort JR, Semesi A, Arrowsmith CH, Kennedy MA
Proteins (2007) , 66(2), 266-71
(Details) (Pub Med ID: 17096419)
PDB ID(s): 1YWUTimes cited: 30 - Solution NMR structure of the junction between tropomyosin molecules: implications for actin binding and regulation.
Greenfield NJ, Huang YJ, Swapna GV, Bhattacharya A, Rapp B, Singh A, Montelione GT, Hitchcock-DeGregori SE
Journal of Molecular Biology (2006) , 364(1), 80-96
(Details) (Pub Med ID: 16999976)
PDB ID(s): 2G9JTimes cited: 43 - NMR structure of protein PA2021 from Pseudomonas aeruginosa.
Lin YC, Liu G, Shen Y, Bertonati C, Yee A, Honig B, Arrowsmith CH, Szyperski T
Proteins (2006) , 65(3), 767-70
(Details) (Pub Med ID: 16927296)
PDB ID(s): 1YWY 1QQG 1EVH 1K5D 1BTN 1DROTimes cited: 1 - Solution structure of acyl carrier protein from Nitrosomonas europaea.
Srisailam S, Lukin JA, Yee A, Semesi A, Arrowsmith CH
Proteins (2006) , 64(3), 800-3
(Details) (Pub Med ID: 16741959)
PDB ID(s): 2AMWTimes cited: 2 - Sequence specific resonance assignment of a hypothetical protein PA0128 from Pseudomonas aeruginosa.
Srisailam S, Lukin JA, Lemak A, Yee A, Arrowsmith CH
Journal of Biomolecular NMR (2006) , 36 Suppl 1(11), 27
(Details) (Pub Med ID: 16703420)
PDB ID(s): 2AKLTimes cited: 2 - Crystal structure of VC0702 at 2.0 A: conserved hypothetical protein from Vibrio cholerae.
Ni S, Forouhar F, Bussiere DE, Robinson H, Kennedy MA
Proteins (2006) , 63(4), 733-41
(Details) (Pub Med ID: 16498616)
PDB ID(s): 1ZNOTimes cited: 3 - Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Yu B, Edstrom WC, Benach J, Hamuro Y, Weber PC, Gibney BR, Hunt JF
Nature (2006) , 439(7078), 879-84
(Details) (Pub Med ID: 16482161)
PDB ID(s): 2FD8 2FDF 2FDG 2FDH 2FDI 2FDJ 2FDKTimes cited: 76 - Crystal structure of human 3-hydroxy-3-methylglutaryl-CoA Lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria.
Fu Z, Runquist JA, Forouhar F, Hussain M, Hunt JF, Miziorko HM, Kim JJ
Journal of Biological Chemistry (2006) , 281(11), 7526-32
(Details) (Pub Med ID: 16330550)
PDB ID(s): 2CW6Times cited: 14 - Crystal structures of two bacterial 3-hydroxy-3-methylglutaryl-CoA lyases suggest a common catalytic mechanism among a family of TIM barrel metalloenzymes cleaving carbon-carbon bonds.
Forouhar F, Hussain M, Farid R, Benach J, Abashidze M, Edstrom WC, Vorobiev SM, Xiao R, Acton TB, Fu Z, Kim JJ, Miziorko HM, Montelione GT, Hunt JF
Journal of Biological Chemistry (2006) , 281(11), 7533-45
(Details) (Pub Med ID: 16330546)
PDB ID(s): 1YDN 1YDOTimes cited: 14 - NMR structure of protein yqbG from Bacillus subtilis reveals a novel alpha-helical protein fold.
Liu G, Shen Y, Xiao R, Acton T, Ma LC, Joachimiak A, Montelione GT, Szyperski T
Proteins (2006) , 62, 288-91
(Details) (Pub Med ID: 16281282)
Target: APC1551
PDB ID(s): 1ZTSTimes cited: 1 - 1H, 13C, and 15N resonance assignments for the protein coded by gene locus BB0938 of Bordetella bronchiseptica.
Rossi P, Theresa Ramelot SS, Xiao R, Ho CK, Ma LC, Acton TB, Kennedy MA, Montelione GT
Journal of Biomolecular NMR (2005) , 33(3), 197
(Details) (Pub Med ID: 16331425)
PDB ID(s): 2EXN
Times cited: 0 - 1H, 13C, and 15N resonance assignments for Escherichia coli ytfP, a member of the broadly conserved UPF0131 protein domain family.
Aramini JM, Swapna GV, Huang YJ, Rajan PK, Xiao R, Shastry R, Acton TB, Cort JR, Kennedy MA, Montelione GT
Journal of Biomolecular NMR (2005) , 33(3), 197
(Details) (Pub Med ID: 16331424)
PDB ID(s): 2EXN 1XHSTimes cited: 1 - Solution structure of the Escherichia coli protein ydhR: a putative mono-oxygenase.
Revington M, Semesi A, Yee A, Shaw GS
Protein Science (2005) , 14(12), 3115-20
(Details) (Pub Med ID: 16260765)
PDB ID(s): 2ASYTimes cited: 2 - Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes.
Powers R, Mirkovic N, Goldsmith-Fischman S, Acton TB, Chiang Y, Huang YJ, Ma L, Rajan PK, Cort JR, Kennedy MA, Liu J, Rost B, Honig B, Murray D, Montelione GT
Protein Science (2005) , 14(11), 2849-61
(Details) (Pub Med ID: 16251366)
PDB ID(s): 1RZWTimes cited: 13 - Structural and functional evidence for Bacillus subtilis PaiA as a novel N1-spermidine/spermine acetyltransferase.
Forouhar F, Lee IS, Vujcic J, Vujcic S, Shen J, Vorobiev SM, Xiao R, Acton TB, Montelione GT, Porter CW, Tong L
Journal of Biological Chemistry (2005) , 280(48), 40328-36
(Details) (Pub Med ID: 16210326)
PDB ID(s): 1TIQTimes cited: 10 - Solution structure of YKR049C, a putative redox protein from Saccharomyces cerevisiae.
Jung JW, Yee A, Wu B, Arrowsmith CH, Lee W
Journal of Biochemistry and Molecular Biology (2005) , 38(5), 550-4
(Details) (Pub Med ID: 16202234)
PDB ID(s): 1WPITimes cited: 7 - GFT NMR based resonance assignment for the 21 kDa human protein UFC1.
Liu G, Aramini J, Atreya HS, Eletsky A, Xiao R, Acton T, Ma L, Montelione GT, Szyperski T
Journal of Biomolecular NMR (2005) , 32(3), 261
(Details) (Pub Med ID: 16132835)
PDB ID(s): 2K07Times cited: 8 - A structure-based model of the c-Myc/Bin1 protein interaction shows alternative splicing of Bin1 and c-Myc phosphorylation are key binding determinants.
Pineda-Lucena A, Ho CS, Mao DY, Sheng Y, Laister RC, Muhandiram R, Lu Y, Seet BT, Katz S, Szyperski T, Penn LZ, Arrowsmith CH
Journal of Molecular Biology (2005) , 351(1), 182-94
(Details) (Pub Med ID: 15992821)
PDB ID(s): 1MUZ 1MV0 1MV3Times cited: 22 - NMR solution structure of Thermotoga maritima protein TM1509 reveals a Zn-metalloprotease-like tertiary structure.
Penhoat CH, Li Z, Atreya HS, Kim S, Yee A, Xiao R, Murray D, Arrowsmith CH, Szyperski T
Journal of Structural and Functional Genomics (2005) , 6(1), 51-62
(Details) (Pub Med ID: 15965736)
PDB ID(s): 1TVITimes cited: 3 - High-quality homology models derived from NMR and X-ray structures of E. coli proteins YgdK and Suf E suggest that all members of the YgdK/Suf E protein family are enhancers of cysteine desulfurases.
Liu G, Li Z, Chiang Y, Acton T, Montelione GT, Murray D, Szyperski T
Protein Science (2005) , 14(6), 1597-608
(Details) (Pub Med ID: 15930006)
PDB ID(s): 1NI7Times cited: 17 - The 2.35 A structure of the TenA homolog from Pyrococcus furiosus supports an enzymatic function in thiamine metabolism.
Benach J, Edstrom WC, Lee I, Das K, Cooper B, Xiao R, Liu J, Rost B, Acton TB, Montelione GT, Hunt JF
Acta Crystallographica Section D: Biological Crystallography (2005) , 61(Pt 5), 589-98
(Details) (Pub Med ID: 15858269)
PDB ID(s): 1RTWTimes cited: 3 - Structural and biochemical studies identify tobacco SABP2 as a methyl salicylate esterase and implicate it in plant innate immunity.
Forouhar F, Yang Y, Kumar D, Chen Y, Fridman E, Park SW, Chiang Y, Acton TB, Montelione GT, Pichersky E, Klessig DF, Tong L
Proceedings of the National Academy of Sciences of the United States of America (2005) , 102(5), 1773-8
(Details) (Pub Med ID: 15668381)
PDB ID(s): 1Y7H 1Y7I 1XKLTimes cited: 86 - NMR structure of the 18 kDa protein CC1736 from Caulobacter crescentus identifies a member of the START domain superfamily and suggests residues mediating substrate specificity.
Shen Y, Goldsmith-Fischman S, Atreya HS, Acton T, Ma L, Xiao R, Honig B, Montelione GT, Szyperski T
Proteins (2005) , 58(3), 747-50
(Details) (Pub Med ID: 15616961)
PDB ID(s): 1T17 1BV1 3PMG 1JSS 1FVZ 1SJWTimes cited: 9 - A novel member of the YchN-like fold: solution structure of the hypothetical protein Tm0979 from Thermotoga maritima.
Gaspar JA, Liu C, Vassall KA, Meglei G, Stephen R, Stathopulos PB, Pineda-Lucena A, Wu B, Yee A, Arrowsmith CH, Meiering EM
Protein Science (2005) , 14(1), 216-23
(Details) (Pub Med ID: 15608123)
PDB ID(s): 1X9ATimes cited: 8 - Solution NMR structure of the iron-sulfur cluster assembly protein U (IscU) with zinc bound at the active site.
Ramelot TA, Cort JR, Goldsmith-Fischman S, Kornhaber GJ, Xiao R, Shastry R, Acton TB, Honig B, Montelione GT, Kennedy MA
Journal of Molecular Biology (2004) , 344(2), 567-83
(Details) (Pub Med ID: 15522305)
PDB ID(s): 1R9P 1Q48Times cited: 61 - The SufE sulfur-acceptor protein contains a conserved core structure that mediates interdomain interactions in a variety of redox protein complexes.
Goldsmith-Fischman S, Kuzin A, Edstrom WC, Benach J, Shastry R, Xiao R, Acton TB, Honig B, Montelione GT, Hunt JF
Journal of Molecular Biology (2004) , 344(2), 549-65
(Details) (Pub Med ID: 15522304)
PDB ID(s): 1MZGTimes cited: 27 - 1H, 13C, and 15N assignments for the Archaeglobus fulgidis protein AF2095
Powers R, Acton TB, Chiang Y, Paranji R, Cort JR, Kennedy MA, Liu J, Ma L, Rost B, Montelione GT
Journal of Biomolecular NMR (2004) , 1, 107-108
(Details) (Pub Med ID: 15452442)
PDB ID(s): 1RZWTimes cited: 2 - Resonance assignments for the 18 kDa protein CC1736 from Caulobacter crescentus.
Shen Y, Atreya HS, Xiao R, Acton TB, Shastry R, Ma L, Montelione GT, Szyperski T
Journal of Biomolecular NMR (2004) , 29, 549-50
(Details) (Pub Med ID: 15243193)
PDB ID(s): 1T17Times cited: 2 - Solution structure of the hypothetical protein Mth677 from Methanobacterium thermoautotrophicum: a novel alpha+beta fold.
Blanco FJ, Yee A, Campos-Olivas R, Ortiz AR, Devos D, Valencia A, Arrowsmith CH, Rico M
Protein Science (2004) , 13(6), 1458-65
(Details) (Pub Med ID: 15152082)
PDB ID(s): 1PU1Times cited: 1 - NMR structure of the hypothetical protein NMA1147 from Neisseria meningitidis reveals a distinct 5-helix bundle.
Liu G, Sukumaran DK, Xu D, Chiang Y, Acton T, Goldsmith-Fischman S, Honig B, Montelione GT, Szyperski T
Proteins (2004) , 55(3), 756-8
(Details) (Pub Med ID: 15103637)
PDB ID(s): 1PUZTimes cited: 1 - The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold.
Herve du Penhoat C, Atreya HS, Shen Y, Liu G, Acton TB, Xiao R, Li Z, Murray D, Montelione GT, Szyperski T
Protein Science (2004) , 13(5), 1407-16
(Details) (Pub Med ID: 15096641)
PDB ID(s): 1QXFTimes cited: 1 - Solution structure of a novel calcium binding protein, MTH1880, from Methanobacterium thermoautotrophicum.
Lee CH, Jung JW, Yee A, Arrowsmith CH, Lee W
Protein Science (2004) , 13(4), 1148-54
(Details) (Pub Med ID: 15044740)
PDB ID(s): 1IQO 1IQSTimes cited: 6 - Crystal structure of RlmAI: implications for understanding the 23S rRNA G745/G748-methylation at the macrolide antibiotic-binding site.
Das K, Acton T, Chiang Y, Shih L, Arnold E, Montelione GT
Proceedings of the National Academy of Sciences of the United States of America (2004) , 101(12), 4041-6
(Details) (Pub Med ID: 14999102)
PDB ID(s): 1P91Times cited: 13 - NMR structure of the hypothetical protein AQ-1857 encoded by the Y157 gene from Aquifex aeolicus reveals a novel protein fold.
Xu D, Liu G, Xiao R, Acton T, Goldsmith-Fischman S, Honig B, Montelione GT, Szyperski T
Proteins (2004) , 54(4), 794-6
(Details) (Pub Med ID: 14997575)
PDB ID(s): 1NWBTimes cited: 4 - The solution structure of the pH-induced monomer of dynein light-chain LC8 from Drosophila.
Makokha M, Huang YJ, Montelione G, Edison AS, Barbar E
Protein Science (2004) , 13(3), 727-34
(Details) (Pub Med ID: 14767079)
PDB ID(s): 1RHWTimes cited: 21 - Backbone 1H, 15N and 13C assignments for the 21 kDa Caenorhabditis elegans homologue of "brain-specific" protein.
Monleón D, Chiang Y, Aramini JM, Swapna GV, Macapagal D, Gunsalus KC, Kim S, Szyperski T, Montelione GT
Journal of Biomolecular NMR (2004) , 28(1), 91-2
(Details) (Pub Med ID: 14739645)
PDB ID(s): 1PULTimes cited: 4 - A novel NAD-binding protein revealed by the crystal structure of 2,3-diketo-L-gulonate reductase (YiaK).
Forouhar F, Lee I, Benach J, Kulkarni K, Xiao R, Acton TB, Montelione GT, Tong L
Journal of Biological Chemistry (2004) , 279(13), 13148-55
(Details) (Pub Med ID: 14718529)
PDB ID(s): 1NXU 1S20Times cited: 7 - Solution structure of ribosomal protein S28E from Methanobacterium thermoautotrophicum.
Wu B, Yee A, Pineda-Lucena A, Semesi A, Ramelot TA, Cort JR, Jung JW, Edwards A, Lee W, Kennedy M, Arrowsmith CH
Protein Science (2003) , 12(12), 2831-7
(Details) (Pub Med ID: 14627743)
PDB ID(s): 1NE3Times cited: 9 - Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii.
Aramini JM, Huang YJ, Cort JR, Goldsmith-Fischman S, Xiao R, Shih LY, Ho CK, Liu J, Rost B, Honig B, Kennedy MA, Acton TB, Montelione GT
Protein Science (2003) , 12(12), 2823-30
(Details) (Pub Med ID: 14627742)
PDB ID(s): 1NY4Times cited: 9 - Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot.
Bayro MJ, Mukhopadhyay J, Swapna GV, Huang JY, Ma LC, Sineva E, Dawson PE, Montelione GT, Ebright RH
Journal of the American Chemical Society (2003) , 125(41), 12382-3
(Details) (Pub Med ID: 14531661)
PDB ID(s): 1PP5Times cited: 93 - Functional assignment based on structural analysis: crystal structure of the yggJ protein (HI0303) of Haemophilus influenzae reveals an RNA methyltransferase with a deep trefoil knot.
Forouhar F, Shen J, Xiao R, Acton TB, Montelione GT, Tong L
Proteins (2003) , 53(2), 329-32
(Details) (Pub Med ID: 14517985)
PDB ID(s): 1NXZTimes cited: 24 - Resonance assignments for the hypothetical protein yggU from Escherichia coli.
Aramini JM, Mills JL, Xiao R, Acton TB, Wu MJ, Szyperski T, Montelione GT
Journal of Biomolecular NMR (2003) , 27(3), 285-6
(Details) (Pub Med ID: 12975589)
PDB ID(s): 1N91Times cited: 3 - Solution structure of the yeast ubiquitin-like modifier protein Hub1.
Ramelot TA, Cort JR, Yee AA, Semesi A, Edwards AM, Arrowsmith CH, Kennedy MA
Journal of Structural and Functional Genomics (2003) , 4(1), 25-30
(Details) (Pub Med ID: 12943364)
PDB ID(s): 1M94Times cited: 17 - Molecular modeling of the membrane targeting of phospholipase C pleckstrin homology domains.
Singh SM, Murray D
Protein Science (2003) , 12, 1934-53
(Details) (Pub Med ID: 12930993)
PDB ID(s): 1MAI 1FB8 1B55Times cited: 38 - 1H, 13C and 15N resonance assignments for methionine sulfoxide reductase B from Bacillus subtilis.
Zheng D, Cort JR, Chiang Y, Acton T, Kennedy MA, Montelione GT
Journal of Biomolecular NMR (2003) , 27(2), 183-4
(Details) (Pub Med ID: 12913416)
PDB ID(s): 1XM0Times cited: 3 - Crystal structures of MTH1187 and its yeast ortholog YBL001c.
Tao X, Khayat R, Christendat D, Savchenko A, Xu X, Goldsmith-Fischman S, Honig B, Edwards A, Arrowsmith CH, Tong L
Proteins (2003) , 52(3), 478-80
(Details) (Pub Med ID: 12866058)
PDB ID(s): 1LXJ 1LXNTimes cited: 6 - Solution structure of Vibrio cholerae protein VC0424: a variation of the ferredoxin-like fold.
Ramelot TA, Ni S, Goldsmith-Fischman S, Cort JR, Honig B, Kennedy MA
Protein Science (2003) , 12(7), 1556-61
(Details) (Pub Med ID: 12824501)
PDB ID(s): 1NXITimes cited: 9 - A novel member of the split betaalphabeta fold: Solution structure of the hypothetical protein YML108W from Saccharomyces cerevisiae.
Pineda-Lucena A, Liao JC, Cort JR, Yee A, Kennedy MA, Edwards AM, Arrowsmith CH
Protein Science (2003) , 12(5), 1136-40
(Details) (Pub Med ID: 12717036)
PDB ID(s): 1N6ZTimes cited: 2 - Solution NMR structure of ribosome-binding factor A (RbfA), a cold-shock adaptation protein from Escherichia coli.
Huang YJ, Swapna GV, Rajan PK, Ke H, Xia B, Shukla K, Inouye M, Montelione GT
Journal of Molecular Biology (2003) , 327(2), 521-36
(Details) (Pub Med ID: 12628255)
PDB ID(s): 1KKGTimes cited: 42 - The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase.
Benach J, Lee I, Edstrom W, Kuzin AP, Chiang Y, Acton TB, Montelione GT, Hunt JF
Journal of Biological Chemistry (2003) , 278(21), 19176-82
(Details) (Pub Med ID: 12624088)
PDB ID(s): 1NPDTimes cited: 34 - Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing.
Szymczyna BR, Bowman J, McCracken S, Pineda-Lucena A, Lu Y, Cox B, Lambermon M, Graveley BR, Arrowsmith CH, Blencowe BJ
Genes and Development (2003) , 17(4), 461-75
(Details) (Pub Med ID: 12600940)
PDB ID(s): 1MP1Times cited: 22 - The structure of the carboxyl terminus of striated alpha-tropomyosin in solution reveals an unusual parallel arrangement of interacting alpha-helices.
Greenfield NJ, Swapna GV, Huang Y, Palm T, Graboski S, Montelione GT, Hitchcock-DeGregori SE
Biochemistry (2003) , 42(3), 614-9
(Details) (Pub Med ID: 12534273)
PDB ID(s): 1MV4Times cited: 37 - Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643.
Yang Z, Savchenko A, Yakunin A, Zhang R, Edwards A, Arrowsmith C, Tong L
Journal of Biological Chemistry (2003) , 278(10), 8804-8
(Details) (Pub Med ID: 12496312)
PDB ID(s): 1H2HTimes cited: 27 - Crystal structures of the BtuF periplasmic-binding protein for vitamin B12 suggest a functionally important reduction in protein mobility upon ligand binding.
Karpowich NK, Huang HH, Smith PC, Hunt JF
Journal of Biological Chemistry (2003) , 278(10), 8429-34
(Details) (Pub Med ID: 12468528)
PDB ID(s): 1N4A 1N4DTimes cited: 78 - Structural basis for ubiquitin-like ISG 15 protein binding to the NS1 protein of influenza B virus: a protein-protein interaction function that is not shared by the corresponding N-terminal domain of the NS1 protein of influenza A virus.
Yuan W, Aramini JM, Montelione GT, Krug RM
Virology (2002) , 304(2), 291-301
(Details) (Pub Med ID: 12504570)
PDB ID(s): 1NS1Times cited: 23 - The crystal structure of MT0146/CbiT suggests that the putative precorrin-8w decarboxylase is a methyltransferase.
Keller JP, Smith PM, Benach J, Christendat D, deTitta GT, Hunt JF
Structure (2002) , 10(11), 1475-87
(Details) (Pub Med ID: 12429089)
PDB ID(s): 1F38 1KXZ 1L3B 1L3C 1L3ITimes cited: 22 - Myxoma virus immunomodulatory protein M156R is a structural mimic of eukaryotic translation initiation factor eIF2alpha.
Ramelot TA, Cort JR, Yee AA, Liu F, Goshe MB, Edwards AM, Smith RD, Arrowsmith CH, Dever TE, Kennedy MA
Journal of Molecular Biology (2002) , 322(5), 943-54
(Details) (Pub Med ID: 12367520)
PDB ID(s): 1JJGTimes cited: 15 - Crystal structure of the BEACH domain reveals an unusual fold and extensive association with a novel PH domain.
Jogl G, Shen Y, Gebauer D, Li J, Wiegmann K, Kashkar H, Krönke M, Tong L
EMBO Journal (2002) , 21(18), 4785-95
(Details) (Pub Med ID: 12234919)
PDB ID(s): 1MI1Times cited: 41 - NMR structure of conserved eukaryotic protein ZK652.3 from C. elegans: a ubiquitin-like fold.
Cort JR, Chiang Y, Zheng D, Montelione GT, Kennedy MA
Proteins (2002) , 48(4), 733-6
(Details) (Pub Med ID: 12211038)
PDB ID(s): 1L7YTimes cited: 7 - NMR structure of the Escherichia coli protein YacG: a novel sequence motif in the zinc-finger family of proteins.
Ramelot TA, Cort JR, Yee AA, Semesi A, Edwards AM, Arrowsmith CH, Kennedy MA
Proteins (2002) , 49(2), 289-93
(Details) (Pub Med ID: 12211008)
PDB ID(s): 1LV3Times cited: 8 - Crystal structure of MTH169, a crucial component of phosphoribosylformylglycinamidine synthetase.
Batra R, Christendat D, Edwards A, Arrowsmith C, Tong L
Proteins (2002) , 49(2), 285-8
(Details) (Pub Med ID: 12211007)
PDB ID(s): 1GTDTimes cited: 10 - NMR structure of the hypothetical protein encoded by the YjbJ gene from Escherichia coli.
Pineda-Lucena A, Liao J, Wu B, Yee A, Cort JR, Kennedy MA, Edwards AM, Arrowsmith CH
Proteins (2002) , 47(4), 572-4
(Details) (Pub Med ID: 12001238)
PDB ID(s): 1JYG 1G8P 1T7PTimes cited: 5 - 1H, 13C, and 15N resonance assignments and secondary structure of the PWI domain from SRm160 using reduced dimensionality NMR.
Szymczyna BR, Pineda-Lucena A, Mills JL, Szyperski T, Arrowsmith CH
Journal of Biomolecular NMR (2002) , 22(3), 299-300
(Details) (Pub Med ID: 11991360)Times cited: 3 - Semi-automated backbone resonance assignments of the extracellular ligand-binding domain of an ionotropic glutamate receptor.
McFeeters RL, Swapna GV, Montelione GT, Oswald RE
Journal of Biomolecular NMR (2002) , 22(3), 297-8
(Details) (Pub Med ID: 11991359)Times cited: 12 - Solution structure of the hypothetical protein MTH0637 from Methanobacterium thermoautotrophicum.
Pineda-Lucena A, Yi GS, Chang X, Cort JR, Kennedy MA, Edwards AM, Arrowsmith CH
Journal of Biomolecular NMR (2002) , 22(3), 291-4
(Details) (Pub Med ID: 11991357)Times cited: 2 - Identification of a novel archaebacterial thioredoxin: determination of function through structure.
Bhattacharyya S, Habibi-Nazhad B, Amegbey G, Slupsky CM, Yee A, Arrowsmith C, Wishart DS
Biochemistry (2002) , 41(15), 4760-70
(Details) (Pub Med ID: 11939770)
PDB ID(s): 1ILOTimes cited: 16 - Resonance assignments for cold-shock protein ribosome-binding factor A (RbfA) from Escherichia coli.
Swapna GV, Shukla K, Huang YJ, Ke H, Xia B, Inouye M, Montelione GT
Journal of Biomolecular NMR (2001) , 21(4), 389-90
(Details) (Pub Med ID: 11824762)
PDB ID(s): 1KKGTimes cited: 4 - X-ray crystal structure of MTH938 from Methanobacterium thermoautotrophicum at 2.2 A resolution reveals a novel tertiary protein fold.
Das K, Xiao R, Wahlberg E, Hsu F, Arrowsmith CH, Montelione GT, Arnold E
Proteins (2001) , 45(4), 486-8
(Details) (Pub Med ID: 11746696)
PDB ID(s): 1IHNTimes cited: 4 - Solution structure of Pyrobaculum aerophilum DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase.
Cort JR, Mariappan SV, Kim CY, Park MS, Peat TS, Waldo GS, Terwilliger TC, Kennedy MA
European Journal of Biochemistry (2001) , 268(22), 5842-50
(Details) (Pub Med ID: 11722571)
PDB ID(s): 1JI8Times cited: 23 - NMR-based structure of the conserved protein MTH865 from the archaeon Methanobacterium thermoautotrophicum.
Lee GM, Edwards AM, Arrowsmith CH, McIntosh LP
Journal of Biomolecular NMR (2001) , 21(1), 63-6
(Details) (Pub Med ID: 11693569)
PDB ID(s): 1IIOTimes cited: 1 - Solution NMR structure and folding dynamics of the N terminus of a rat non-muscle alpha-tropomyosin in an engineered chimeric protein.
Greenfield NJ, Huang YJ, Palm T, Swapna GV, Monleon D, Montelione GT, Hitchcock-DeGregori SE
Journal of Molecular Biology (2001) , 312(4), 833-47
(Details) (Pub Med ID: 11575936)
PDB ID(s): 1IHQTimes cited: 37 - Resonance assignments for the N-terminal domain from human RNA-binding protein with multiple splicing (RBP-MS).
Sahasrabudhe PV, Xiao R, Montelione GT
Journal of Biomolecular NMR (2001) , 19(3), 285-6
(Details) (Pub Med ID: 11330819)Times cited: 1 - NMR structure determination and structure-based functional characterization of conserved hypothetical protein MTH1175 from Methanobacterium thermoautotrophicum.
Cort JR, Yee A, Edwards AM, Arrowsmith CH, Kennedy MA
Journal of Structural and Functional Genomics (2000) , 1(1), 15-25
(Details) (Pub Med ID: 12836677)
PDB ID(s): 1EO1Times cited: 13 - Structural basis for signal transduction by the Toll/interleukin-1 receptor domains.
Xu Y, Tao X, Shen B, Horng T, Medzhitov R, Manley JL, Tong L
Nature (2000) , 408(6808), 111-5
(Details) (Pub Med ID: 11081518)
PDB ID(s): 1FYV 1FYW 1FYXTimes cited: 353 - Structure-based functional classification of hypothetical protein MTH538 from Methanobacterium thermoautotrophicum.
Cort JR, Yee A, Edwards AM, Arrowsmith CH, Kennedy MA
Journal of Molecular Biology (2000) , 302(1), 189-203
(Details) (Pub Med ID: 10964569)
PDB ID(s): 1EIWTimes cited: 17 - Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum.
Mackereth CD, Arrowsmith CH, Edwards AM, McIntosh LP
Proceedings of the National Academy of Sciences of the United States of America (2000) , 97(12), 6316-21
(Details) (Pub Med ID: 10841539)
PDB ID(s): 1EF4Times cited: 14 - Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum.
Yee A, Booth V, Dharamsi A, Engel A, Edwards AM, Arrowsmith CH
Proceedings of the National Academy of Sciences of the United States of America (2000) , 97(12), 6311-5
(Details) (Pub Med ID: 10841538)
PDB ID(s): 1ELKTimes cited: 15 - Crystal structure of dTDP-4-keto-6-deoxy-D-hexulose 3,5-epimerase from Methanobacterium thermoautotrophicum complexed with dTDP.
Christendat D, Saridakis V, Dharamsi A, Bochkarev A, Pai EF, Arrowsmith CH, Edwards AM
Journal of Biological Chemistry (2000) , 275(32), 24608-12
(Details) (Pub Med ID: 10827167)
PDB ID(s): 1EP0 1EPZTimes cited: 39
2012 (click to unfold)
2011 (click to unfold)
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2009 (click to unfold)
2008 (click to unfold)
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Average number of citations per publication (structural): 13.4
Methodological and Other Publications
- Genome-wide Functional Annotation of Dual-Specificity Protein- and Lipid-Binding Modules that Regulate Protein Interactions.
Chen Y, Sheng R, Källberg M, Silkov A, Tun MP, Bhardwaj N, Kurilova S, Hall RA, Honig B, Lu H, Cho W
Molecular cell (2012) , e-pub ahead of print,
(Details) (Pub Med ID: 22445486)
Times cited: no data - Segmental isotope labeling of proteins for NMR structural study using a protein S tag for higher expression and solubility.
Kobayashi H, Swapna GV, Wu KP, Afinogenova Y, Conover K, Mao B, Montelione GT, Inouye M
Journal of Biomolecular NMR (2012) , 52, 303-13
(Details) (Pub Med ID: 22389115)
Times cited: 0 - Blind testing of routine, fully automated determination of protein structures from NMR data.
Rosato A, Aramini JM, Arrowsmith C, Bagaria A, Baker D, Cavalli A, Doreleijers JF, Eletsky A, Giachetti A, Guerry P, Gutmanas A, Güntert P, He Y, Herrmann T, Huang YJ, Jaravine V, Jonker HR, Kennedy MA, Lange OF, Liu G, Malliavin TE, Mani R, Mao B, Montelione GT, Nilges M, Rossi P, van der Schot G, Schwalbe H, Szyperski TA, Vendruscolo M, Vernon R, Vranken WF, de Vries S, Vuister GW, Wu B, Yang Y, Bonvin AM
Structure (2012) , 20, 227-36
(Details) (Pub Med ID: 22325772)
Times cited: 0 - Protein structure validation by generalized linear model root-mean-square deviation prediction.
Bagaria A, Jaravine V, Huang YJ, Montelione GT, Güntert P
Protein Science (2012) , 21, 229-38
(Details) (Pub Med ID: 22113924)
Times cited: 0 - Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer.
Der BS, Machius M, Miley MJ, Mills JL, Szyperski T, Kuhlman B
Journal of the American Chemical Society (2012) , 134, 375-85
(Details) (Pub Med ID: 22092237)
Times cited: 0 - Rapid structure determination using sparse experimental data and homologous structure information
Thompson J, Sgourakis NG, Liu G, Rossi P, Tang Y, Mills J, Szyperski T, Montelione GT, Baker D
Proceedings of the National Academy of Sciences of the United States of America (2012) , in press,
(Details)
Times cited: no data - Altering the O2-dependent reactivity of de novo ferri proteins.
Reig A, Pires M, Snyder RA, Wu Y, Jo H, Kulp D, Calhoun J, Szyperski T, Solomon E, DeGrado B
Nature Chemical Biology (2012) , , In press
(Details)
Target: +1
Times cited: no data - MarkUs: a server to navigate sequence-structure-function space.
Fischer M, Zhang QC, Dey F, Chen BY, Honig B, Petrey D
Nucleic Acids Research (2011) , 39, W357-61
(Details) (Pub Med ID: 21672961)Times cited: 1 - Improved technologies now routinely provide protein NMR structures useful for molecular replacement.
Mao B, Guan R, Montelione GT
Structure (2011) , 19, 757-66
(Details) (Pub Med ID: 21645849)
Times cited: 0 - PredUs: a web server for predicting protein interfaces using structural neighbors.
Zhang QC, Deng L, Fisher M, Guan J, Honig B, Petrey D
Nucleic Acids Research (2011) , 39, W283-7
(Details) (Pub Med ID: 21609948)Times cited: 1 - Improved molecular replacement by density- and energy-guided protein structure optimization.
DiMaio F, Terwilliger TC, Read RJ, Wlodawer A, Oberdorfer G, Wagner U, Valkov E, Alon A, Fass D, Axelrod HL, Das D, Vorobiev SM, Iwaï H, Pokkuluri PR, Baker D
Nature (2011) , 473, 540-3
(Details) (Pub Med ID: 21532589)Times cited: 10 - Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings.
Sgourakis NG, Lange OF, DiMaio F, André I, Fitzkee NC, Rossi P, Montelione GT, Bax A, Baker D
Journal of the American Chemical Society (2011) , 133, 6288-98
(Details) (Pub Med ID: 21466200)Times cited: 5 - Small angle X-ray scattering as a complementary tool for high-throughput structural studies.
Grant TD, Luft JR, Wolfley JR, Tsuruta H, Martel A, Montelione GT, Snell EH
Biopolymers (2011) , 95, 517-30
(Details) (Pub Med ID: 21462184)Times cited: 3 - A de novo protein binding pair by computational design and directed evolution.
Karanicolas J, Corn JE, Chen I, Joachimiak LA, Dym O, Peck SH, Albeck S, Unger T, Hu W, Liu G, Delbecq S, Montelione GT, Spiegel CP, Liu DR, Baker D
Molecular cell (2011) , 42, 250-60
(Details) (Pub Med ID: 21458342)Times cited: 9 - Preparation of protein samples for NMR structure, function, and small-molecule screening studies.
Acton TB, Xiao R, Anderson S, Aramini J, Buchwald WA, Ciccosanti C, Conover K, Everett J, Hamilton K, Huang YJ, Janjua H, Kornhaber G, Lau J, Lee DY, Liu G, Maglaqui M, Ma L, Mao L, Patel D, Rossi P, Sahdev S, Shastry R, Swapna GV, Tang Y, Tong S, Wang D, Wang H, Zhao L, Montelione GT
Methods in Enzymology (2011) , 493, 21-60
(Details) (Pub Med ID: 21371586)Times cited: 5 - Suppression of phospholipid biosynthesis by cerulenin in the condensed Single-Protein-Production (cSPP) system.
Mao L, Inoue K, Tao Y, Montelione GT, McDermott AE, Inouye M
Journal of Biomolecular NMR (2011) , 49, 131-7
(Details) (Pub Med ID: 21279668)Times cited: 3 - A novel strategy for NMR resonance assignment and protein structure determination.
Lemak A, Gutmanas A, Chitayat S, Karra M, Farès C, Sunnerhagen M, Arrowsmith CH
Journal of Biomolecular NMR (2011) , 49, 27-38
(Details) (Pub Med ID: 21161328)Times cited: 6 - Structural NMR of protein oligomers using hybrid methods.
Wang X, Lee HW, Liu Y, Prestegard JH
Journal of Structural Biology (2011) , 173, 515-29
(Details) (Pub Med ID: 21074622)Times cited: 3 - The Use of the Condensed Single Protein Production System for Isotope-Labeled Outer Membrane Proteins, OmpA and OmpX in E. coli.
Vaiphei ST, Tang Y, Montelione GT, Inouye M
Molecular biotechnology (2011) , 47, 205-10
(Details) (Pub Med ID: 20820947)Times cited: 1 - Lessons from high throughput protein crystallization screening: 10 years of practical experience
Luft J, Snell EH, DeTitta GT
Expert Opin Drug Discov (2011) , 6, 1-16
(Details)Times cited: 1 - VASP: a volumetric analysis of surface properties yields insights into protein-ligand binding specificity.
Chen BY, Honig B
PLoS Computational Biology (2010) , 6,
(Details) (Pub Med ID: 20814581)Times cited: 3 - Combining NMR and EPR methods for homodimer protein structure determination.
Yang Y, Ramelot TA, McCarrick RM, Ni S, Feldmann EA, Cort JR, Wang H, Ciccosanti C, Jiang M, Janjua H, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA
Journal of the American Chemical Society (2010) , 132, 11910-3
(Details) (Pub Med ID: 20698532)Times cited: 5 - The New York Consortium on Membrane Protein Structure (NYCOMPS): a high-throughput platform for structural genomics of integral membrane proteins.
Love J, Mancia F, Shapiro L, Punta M, Rost B, Girvin M, Wang DN, Zhou M, Hunt JF, Szyperski T, Gouaux E, Mackinnon R, McDermott A, Honig B, Inouye M, Montelione G, Hendrickson WA
Journal of Structural and Functional Genomics (2010) , 11, 191-9
(Details) (Pub Med ID: 20690043)Times cited: 7 - The high-throughput protein sample production platform of the Northeast Structural Genomics Consortium.
Xiao R, Anderson S, Aramini J, Belote R, Buchwald WA, Ciccosanti C, Conover K, Everett JK, Hamilton K, Huang YJ, Janjua H, Jiang M, Kornhaber GJ, Lee DY, Locke JY, Ma LC, Maglaqui M, Mao L, Mitra S, Patel D, Rossi P, Sahdev S, Sharma S, Shastry R, Swapna GV, Tong SN, Wang D, Wang H, Zhao L, Montelione GT, Acton TB
Journal of Structural Biology (2010) , 172, 21-33
(Details) (Pub Med ID: 20688167)Times cited: 15 - NleG Type 3 effectors from enterohaemorrhagic Escherichia coli are U-Box E3 ubiquitin ligases.
Wu B, Skarina T, Yee A, Jobin MC, Dileo R, Semesi A, Fares C, Lemak A, Coombes BK, Arrowsmith CH, Singer AU, Savchenko A
PLoS pathogens (2010) , 6, e1000960
(Details) (Pub Med ID: 20585566)Times cited: 6 - Engineering of a wheat germ expression system to provide compatibility with a high throughput pET-based cloning platform.
Zhao L, Zhao KQ, Hurst R, Slater MR, Acton TB, Swapna GV, Shastry R, Kornhaber GJ, Montelione GT
Journal of Structural and Functional Genomics (2010) , 11, 201-9
(Details) (Pub Med ID: 20574660)Times cited: 4 - Protein interface conservation across structure space.
Zhang QC, Petrey D, Norel R, Honig BH
Proceedings of the National Academy of Sciences of the United States of America (2010) , 107, 10896-901
(Details) (Pub Med ID: 20534496)Times cited: 14 - PUDGE: a flexible, interactive server for protein structure prediction.
Norel R, Petrey D, Honig B
Nucleic Acids Research (2010) , 38, W550-4
(Details) (Pub Med ID: 20525783)
Times cited: 0 - Advances in protein NMR provided by the NIGMS Protein Structure Initiative: impact on drug discovery.
Montelione GT, Szyperski T
Current Opinion in Drug Discovery (2010) , 13, 335-49
(Details) (Pub Med ID: 20443167)Times cited: 2 - High-throughput computational structure-based characterization of protein families: START domains and implications for structural genomics.
Lee H, Li Z, Silkov A, Fischer M, Petrey D, Honig B, Murray D
Journal of Structural and Functional Genomics (2010) , 11, 51-9
(Details) (Pub Med ID: 20383749)Times cited: 3 - Structures of influenza A proteins and insights into antiviral drug targets.
Das K, Aramini JM, Ma LC, Krug RM, Arnold E
Nature Structural & Molecular Biology (2010) , 17, 530-8
(Details) (Pub Med ID: 20383144)Times cited: 29 - Efficient condensed-phase production of perdeuterated soluble and membrane proteins.
Schneider WM, Tang Y, Vaiphei ST, Mao L, Maglaqui M, Inouye M, Roth MJ, Montelione GT
Journal of Structural and Functional Genomics (2010) , 11, 143-54
(Details) (Pub Med ID: 20333498)Times cited: 6 - NMR structure determination for larger proteins using backbone-only data.
Raman S, Lange OF, Rossi P, Tyka M, Wang X, Aramini J, Liu G, Ramelot TA, Eletsky A, Szyperski T, Kennedy MA, Prestegard J, Montelione GT, Baker D
Science (2010) , 327, 1014-8
(Details) (Pub Med ID: 20133520)Times cited: 48 - Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be.
Schaefer C, Schlessinger A, Rost B
Bioinformatics (2010) , 26, 625-631
(Details) (Pub Med ID: 20081223)Times cited: 12 - Accurate automated protein NMR structure determination using unassigned NOESY data.
Raman S, Huang YJ, Mao B, Rossi P, Aramini JM, Liu G, Montelione GT, Baker D
Journal of the American Chemical Society (2010) , 132, 202-7
(Details) (Pub Med ID: 20000319)Times cited: 14 - A microscale protein NMR sample screening pipeline.
Rossi P, Swapna GV, Huang YJ, Aramini JM, Anklin C, Conover K, Hamilton K, Xiao R, Acton TB, Ertekin A, Everett JK, Montelione GT
Journal of Biomolecular NMR (2010) , 46, 11-22
(Details) (Pub Med ID: 19915800)Times cited: 11 - The E. coli single protein production system for production and structural analysis of membrane proteins.
Mao L, Vaiphei ST, Shimazu T, Schneider WM, Tang Y, Mani R, Roth MJ, Montelione GT, Inouye M
Journal of Structural and Functional Genomics (2010) , 11, 81-4
(Details) (Pub Med ID: 19830594)Times cited: 3 - Simultaneous prediction of protein folding and docking at high resolution.
Das R, André I, Shen Y, Wu Y, Lemak A, Bansal S, Arrowsmith CH, Szyperski T, Baker D
Proceedings of the National Academy of Sciences of the United States of America (2009) , 106, 18978-83
(Details) (Pub Med ID: 19864631)Times cited: 34 - Production of membrane proteins for NMR studies using the condensed single protein (cSPP) production system.
Mao L, Tang Y, Vaiphei ST, Shimazu T, Kim SG, Mani R, Fakhoury E, White E, Montelione GT, Inouye M
Journal of Structural and Functional Genomics (2009) , 10, 281-289
(Details) (Pub Med ID: 19856129)Times cited: 12 - Correlating protein function and stability through the analysis of single amino acid substitutions.
Bromberg Y, Rost B
BMC Bioinformatics (2009) , 10 Suppl 8, S8
(Details) (Pub Med ID: 19758472)Times cited: 4 - CASD-NMR: critical assessment of automated structure determination by NMR.
Rosato A, Bagaria A, Baker D, Bardiaux B, Cavalli A, Doreleijers JF, Giachetti A, Guerry P, Güntert P, Herrmann T, Huang YJ, Jonker HR, Mao B, Malliavin TE, Montelione GT, Nilges M, Raman S, van der Schot G, Vranken WF, Vuister GW, Bonvin AM
Nature Methods (2009) , 6, 625-6
(Details) (Pub Med ID: 19718014)Times cited: 11 - Independently inducible system of gene expression for condensed single protein production (cSPP) suitable for high efficiency isotope enrichment.
Schneider WM, Inouye M, Montelione GT, Roth MJ
Journal of Structural and Functional Genomics (2009) , 10, 219-25
(Details) (Pub Med ID: 19642019)Times cited: 6 - NMR structure and dynamics of the engineered fluorescein-binding lipocalin FluA reveal rigidification of beta-barrel and variable loops upon enthalpy-driven ligand binding.
Mills JL, Liu G, Skerra A, Szyperski T
Biochemistry (2009) , 48, 7411-9
(Details) (Pub Med ID: 19603796)Times cited: 2 - PSI-2: structural genomics to cover protein domain family space.
Dessailly BH, Nair R, Jaroszewski L, Fajardo JE, Kouranov A, Lee D, Fiser A, Godzik A, Rost B, Orengo C
Structure (2009) , 17, 869-81
(Details) (Pub Med ID: 19523904)Times cited: 44 - Clean absorption mode NMR data acquisition based on time-proportional phase incrementation.
Wu Y, Ghosh A, Szyperski T
Journal of Structural and Functional Genomics (2009) , 10, 227-32
(Details) (Pub Med ID: 19499349)Times cited: 1 - Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites.
Hurley JM, Woychik NA
Journal of Biological Chemistry (2009) , 284, 18605-13
(Details) (Pub Med ID: 19423702)Times cited: 8 - Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry.
Sharma S, Zheng H, Huang YJ, Ertekin A, Hamuro Y, Rossi P, Tejero R, Acton TB, Xiao R, Jiang M, Zhao L, Ma LC, Swapna GV, Aramini JM, Montelione GT
Proteins (2009) , 76, 882-894
(Details) (Pub Med ID: 19306341)Times cited: 8 - Unique opportunities for NMR methods in structural genomics.
Montelione GT, Arrowsmith C, Girvin ME, Kennedy MA, Markley JL, Powers R, Prestegard JH, Szyperski T
Journal of Structural and Functional Genomics (2009) , 10, 101-106
(Details) (Pub Med ID: 19288278)Times cited: 5 - Outcome of a workshop on applications of protein models in biomedical research.
Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, Humblet C, Jacobson MP, Joachimiak A, Krystek SR, Kortemme T, Kryshtafovych A, Montelione GT, Moult J, Murray D, Sanchez R, Sosnick TR, Standley DM, Stouch T, Vajda S, Vasquez M, Westbrook JD, Wilson IA
Structure (2009) , 17, 151-9
(Details) (Pub Med ID: 19217386)Times cited: 27 - Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage.
Prysak MH, Mozdzierz CJ, Cook AM, Zhu L, Zhang Y, Inouye M, Woychik NA
Molecular Microbiology (2009) , 71, 1071-87
(Details) (Pub Med ID: 19210620)Times cited: 24 - Structural genomics is the largest contributor of novel structural leverage.
Nair R, Liu J, Soong TT, Acton TB, Everett JK, Kouranov A, Fiser A, Godzik A, Jaroszewski L, Orengo C, Montelione GT, Rost B
Journal of Structural and Functional Genomics (2009) , 10, 181-91
(Details) (Pub Med ID: 19194785)Times cited: 28 - Clean absorption-mode NMR data acquisition.
Wu Y, Ghosh A, Szyperski T
Angewandte Chemie International Edition in English (2009) , 48, 1479-83
(Details) (Pub Med ID: 19140147)Times cited: 3 - Use of a synthetic salicylic acid analog to investigate the roles of methyl salicylate and its esterases in plant disease resistance.
Park SW, Liu PP, Forouhar F, Vlot AC, Tong L, Tietjen K, Klessig DF
Journal of Biological Chemistry (2009) , 284, 7307-17
(Details) (Pub Med ID: 19131332)Times cited: 16 - Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study.
Ramelot TA, Raman S, Kuzin AP, Xiao R, Ma LC, Acton TB, Hunt JF, Montelione GT, Baker D, Kennedy MA
Proteins (2009) , 75, 147-67
(Details) (Pub Med ID: 18816799)Times cited: 20 - Cell cycle kinases predicted from conserved biophysical properties.
Wrzeszczynski KO, Rost B
Proteins (2009) , 74, 655-68
(Details) (Pub Med ID: 18704950)
Times cited: 0 - AutoSherlock: a program for effective crystallization data analysis.
Nagel RM, Luft JR, Snell EH
Journal of Applied Crystallography (2008) , 41, 1173-1176
(Details) (Pub Med ID: 19529834)Times cited: 7 - Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.
Price Ii WN, Chen Y, Handelman SK, Neely H, Manor P, Karlin R, Nair R, Liu J, Baran M, Everett J, Tong SN, Forouhar F, Swaminathan SS, Acton T, Xiao R, Luft JR, Lauricella A, Detitta GT, Rost B, Montelione GT, Hunt JF
Nature Biotechnology (2008) , 27, 51-57
(Details) (Pub Med ID: 19079241)
Times cited: no data - Establishing a training set through the visual analysis of crystallization trials. Part II: crystal examples.
Snell EH, Lauricella AM, Potter SA, Luft JR, Gulde SM, Collins RJ, Franks G, Malkowski MG, Cumbaa C, Jurisica I, DeTitta GT
Acta Crystallographica Section D: Biological Crystallography (2008) , 64, 1131-7
(Details) (Pub Med ID: 19020351)Times cited: 7 - Automated identification of complementarity determining regions (CDRs) reveals peculiar characteristics of CDRs and B cell epitopes.
Ofran Y, Schlessinger A, Rost B
Journal of Immunology (2008) , 181, 6230-5
(Details) (Pub Med ID: 18941213)Times cited: 7 - Physical protein-protein interactions predicted from microarrays.
Soong TT, Wrzeszczynski KO, Rost B
Bioinformatics (2008) , 24, 2608-14
(Details) (Pub Med ID: 18829707)Times cited: 13 - Using genetic algorithms to select most predictive protein features.
Kernytsky A, Rost B
Proteins (2008) , 75, 75-88
(Details) (Pub Med ID: 18798568)
Times cited: no data - Quantum chemical 13C(alpha) chemical shift calculations for protein NMR structure determination, refinement, and validation.
Vila JA, Aramini JM, Rossi P, Kuzin A, Su M, Seetharaman J, Xiao R, Tong L, Montelione GT, Scheraga HA
Proceedings of the National Academy of Sciences of the United States of America (2008) , 105, 14389-94
(Details) (Pub Med ID: 18787110)Times cited: 21 - Protein subcellular localization prediction using artificial intelligence technology.
Nair R, Rost B
Methods in Molecular Biology (2008) , 484, 435-63
(Details) (Pub Med ID: 18592195)Times cited: 9 - Targeting the human cancer pathway protein interaction network by structural genomics.
Huang YJ, Hang D, Lu LJ, Tong L, Gerstein MB, Montelione GT
Molecular & Cellular Proteomics (2008) , 7, 2048-60
(Details) (Pub Med ID: 18487680)Times cited: 21 - Sequence specific resonance assignment via Multicanonical Monte Carlo search using an ABACUS approach.
Lemak A, Steren CA, Arrowsmith CH, Llinás M
Journal of Biomolecular NMR (2008) , 41, 29-41
(Details) (Pub Med ID: 18458824)Times cited: 18 - RDC-assisted modeling of symmetric protein homo-oligomers.
Wang X, Bansal S, Jiang M, Prestegard JH
Protein Science (2008) , 17, 899-907
(Details) (Pub Med ID: 18436958)Times cited: 17 - Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit.
Liu M, Zhang Y, Inouye M, Woychik NA
Proceedings of the National Academy of Sciences of the United States of America (2008) , 105, 5885-90
(Details) (Pub Med ID: 18398006)Times cited: 35 - Consistent blind protein structure generation from NMR chemical shift data.
Shen Y, Lange O, Delaglio F, Rossi P, Aramini JM, Liu G, Eletsky A, Wu Y, Singarapu KK, Lemak A, Ignatchenko A, Arrowsmith CH, Szyperski T, Montelione GT, Baker D, Bax A
Proceedings of the National Academy of Sciences of the United States of America (2008) , 105, 4685-90
(Details) (Pub Med ID: 18326625)Times cited: 206 - Protein production and purification.
Structural Genomics Consortium; Architecture et Fonction des Macromolécules Biologiques; Berkeley Structural Genomics Center; China Structural Genomics Consortium; Integrated Center for Structure and Function Innovation; Israel Structural Proteomics Center; Joint Center for Structural Genomics; Midwest Center for Structural Genomics; New York Structural GenomiX Research Center for Structural Genomics; Northeast Structural Genomics Consortium; Oxford Protein Production Facility; Protein Sample Production Facility, Max Delbrück Center for Molecular Medicine; RIKEN Structural Genomics/Proteomics Initiative; SPINE2-Complexes
Nature Methods (2008) , 5, 135-46
(Details) (Pub Med ID: 18235434)Times cited: 75 - Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers
Burley SK, Joachimiak A, Montelione GT, Wilson IA
Structure (2008) , 16(1), 5-11
(Details) (Pub Med ID: 18184575)Times cited: 28 - Assessing model accuracy using the homology modeling automatically software.
Bhattacharya A, Wunderlich Z, Monleon D, Tejero R, Montelione GT
Proteins (2008) , 70(1), 105-18
(Details) (Pub Med ID: 17640066)Times cited: 14 - Natively unstructured regions in proteins identified from contact predictions.
Schlessinger A, Punta M, Rost B
Bioinformatics (2007) , 23, 2376-84
(Details) (Pub Med ID: 17709338)Times cited: 44 - Novel leverage of structural genomics.
Liu J, Montelione GT, Rost B
Nature Biotechnology (2007) , 25(8), 849-51
(Details) (Pub Med ID: 17687356)Times cited: 25 - Natively unstructured loops differ from other loops.
Schlessinger A, Liu J, Rost B
PLoS Computational Biology (2007) , 3, e140
(Details) (Pub Med ID: 17658943)Times cited: 33 - A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.
Andrec M, Snyder DA, Zhou Z, Young J, Montelione GT, Levy RM
Proteins (2007) , 69, 449-65
(Details) (Pub Med ID: 17623851)Times cited: 37 - Comparing classical pathways and modern networks: towards the development of an edge ontology.
Lu LJ, Sboner A, Huang YJ, Lu HX, Gianoulis TA, Yip KY, Kim PM, Montelione GT, Gerstein MB
Trends in Biochemical Sciences (2007) , 32, 320-31
(Details) (Pub Med ID: 17583513)Times cited: 22 - Microgram-scale protein structure determination by NMR.
Aramini JM, Rossi P, Anklin C, Xiao R, Montelione GT
Nature Methods (2007) , 4(6), 491-3
(Details) (Pub Med ID: 17496898)Times cited: 19 - LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
Smith AK, Cheung KH, Yip KY, Schultz M, Gerstein MK
BMC Bioinformatics (2007) , 8 Suppl 3(3), S5
(Details) (Pub Med ID: 17493288)Times cited: 14 - Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments.
Przybylski D, Rost B
Nucleic Acids Research (2007) , 35(7), 2238-46
(Details) (Pub Med ID: 17369271)Times cited: 4 - J-GFT NMR for precise measurement of mutually correlated nuclear spin-spin couplings.
Atreya HS, Garcia E, Shen Y, Szyperski T
Journal of the American Chemical Society (2007) , 129(3), 680-92
(Details) (Pub Med ID: 17227032)Times cited: 15 - Evaluating protein structures determined by structural genomics consortia.
Bhattacharya A, Tejero R, Montelione GT
Proteins (2007) , 66(4), 778-95
(Details) (Pub Med ID: 17186527)Times cited: 109 - Strategies for high-throughput comparative modeling: applications to leverage analysis in structural genomics and protein family organization.
Mirkovic N, Li Z, Parnassa A, Murray D
Proteins (2007) , 66(4), 766-77
(Details) (Pub Med ID: 17154423)Times cited: 11 - FAST-NMR: functional annotation screening technology using NMR spectroscopy.
Mercier KA, Baran M, Ramanathan V, Revesz P, Xiao R, Montelione GT, Powers R
Journal of the American Chemical Society (2006) , 128(47), 15292-9
(Details) (Pub Med ID: 17117882)Times cited: 21 - Bacterial bioreactors for high yield production of recombinant protein.
Suzuki M, Roy R, Zheng H, Woychik N, Inouye M
Journal of Biological Chemistry (2006) , 281(49), 37559-65
(Details) (Pub Med ID: 17020876)Times cited: 27 - Outcome of a workshop on archiving structural models of biological macromolecules.
Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B, Saibil H, Schwede T, Standley DM, Westbrook JD
Structure (2006) , 14, 1211-7
(Details) (Pub Med ID: 16955948)
PDB ID(s): Times cited: 15 - Solution NMR in structural genomics.
Yee A, Gutmanas A, Arrowsmith CH
Current Opinion in Structural Biology (2006) , 16(5), 611-7
(Details) (Pub Med ID: 16942869)Times cited: 26 - Automated streak-seeding with micromachined silicon tools.
Georgiev A, Vorobiev S, Edstrom W, Song T, Laine A, Hunt J, Allen P
Acta Crystallographica Section D: Biological Crystallography (2006) , 62(Pt 9), 1039-45
(Details) (Pub Med ID: 16929105)Times cited: 3 - VISTAL--a new 2D visualization tool of protein 3D structural alignments.
Kolodny R, Honig B
Bioinformatics (2006) , 22(17), 2166-7
(Details) (Pub Med ID: 16837525)Times cited: 2 - Finding one of a kind: advances in single-protein production.
Falzon L, Suzuki M, Inouye M
Current Opinion in Biotechnology (2006) , 17(4), 347-52
(Details) (Pub Med ID: 16828276)Times cited: 4 - Principles and applications of GFT projection NMR spectroscopy.
Szyperski T, Atreya HS
Magnetic Resonance in Chemistry (2006) , 44 Spec No(4), S51-60
(Details) (Pub Med ID: 16826541)Times cited: 19 - Distinguishing protein-coding from non-coding RNAs through support vector machines.
Liu J, Gough J, Rost B
PLoS Genetics (2006) , 2(4), e29
(Details) (Pub Med ID: 16683024)Times cited: 30 - Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction
Kolodny R, Petrey D, Honig B
Current Opinion in Structural Biology (2006) , 16(3), 393-8
(Details) (Pub Med ID: 16678402)Times cited: 66 - Identification of zinc-ligated cysteine residues based on 13Calpha and 13Cbeta chemical shift data.
Kornhaber GJ, Snyder D, Moseley HN, Montelione GT
Journal of Biomolecular NMR (2006) , 34(4), 259-69
(Details) (Pub Med ID: 16645816)Times cited: 26 - Predicting interactions in protein networks by completing defective cliques.
Yu H, Paccanaro A, Trifonov V, Gerstein M
Bioinformatics (2006) , 22(7), 823-9
(Details) (Pub Med ID: 16455753)Times cited: 59 - SPINS: a laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determinations.
Baran MC, Moseley HN, Aramini JM, Bayro MJ, Monleon D, Locke JY, Montelione GT
Proteins (2006) , 62(4), 843-51
(Details) (Pub Med ID: 16395675)Times cited: 7 - A topology-constrained distance network algorithm for protein structure determination from NOESY data.
Huang YJ, Tejero R, Powers R, Montelione GT
Proteins (2006) , 62(3), 587-603
(Details) (Pub Med ID: 16374783)Times cited: 42 - Principles and application of projected multidimensional NMR spectroscopy - G-matrix Fourier Transform NMR
Szyperski T
Emerging Principles in Biophysics (J.L.R. Arrondo and A. Alonso, Eds.), Springer Verlag, New York (2006) Emerging Principles in Biophysics (J.L.R. Arrondo and A. Alonso, Eds.), Springer Verlag, New York
(Details)
Times cited: no data - Protein structure prediction: inroads to biology.
Petrey D, Honig B
Molecular Cell (2005) , 20(6), 811-9
(Details) (Pub Med ID: 16364908)Times cited: 58 - NMR and X-ray crystallography, complementary tools in structural proteomics of small proteins.
Yee AA, Savchenko A, Ignachenko A, Lukin J, Xu X, Skarina T, Evdokimova E, Liu CS, Semesi A, Guido V, Edwards AM, Arrowsmith CH
Journal of the American Chemical Society (2005) , 127(47), 16512-7
(Details) (Pub Med ID: 16305238)Times cited: 37 - Comparisons of NMR spectral quality and success in crystallization demonstrate that NMR and X-ray crystallography are complementary methods for small protein structure determination.
Snyder DA, Chen Y, Denissova NG, Acton T, Aramini JM, Ciano M, Karlin R, Liu J, Manor P, Rajan PA, Rossi P, Swapna GV, Xiao R, Rost B, Hunt J, Montelione GT
Journal of the American Chemical Society (2005) , 127(47), 16505-11
(Details) (Pub Med ID: 16305237)Times cited: 37 - Structural biology: proteins flex to function.
Huang YJ, Montelione GT
Nature (2005) , 438, 36-7
(Details) (Pub Med ID: 16267540)Times cited: 34 - Probing structure and functional dynamics of (large) proteins with aromatic rings: L-GFT-TROSY (4,3)D HCCH NMR spectroscopy.
Eletsky A, Atreya HS, Liu G, Szyperski T
Journal of the American Chemical Society (2005) , 127(42), 14578-9
(Details) (Pub Med ID: 16231903)Times cited: 14 - Automatic classification and pattern discovery in high-throughput protein crystallization trials.
Cumbaa C, Jurisica I
Journal of Structural and Functional Genomics (2005) , 6(2-3), 195-202
(Details) (Pub Med ID: 16211519)Times cited: 6 - PubNet: a flexible system for visualizing literature derived networks.
Douglas SM, Montelione GT, Gerstein M
Genome Biology (2005) , 6, R80
(Details) (Pub Med ID: 16168087)Times cited: 11 - Mechanism of activation for transcription factor PhoB suggested by different modes of dimerization in the inactive and active states.
Bachhawat P, Swapna GV, Montelione GT, Stock AM
Structure (2005) , 13(9), 1353-63
(Details) (Pub Med ID: 16154092)Times cited: 44 - ABACUS, a direct method for protein NMR structure computation via assembly of fragments.
Grishaev A, Steren CA, Wu B, Pineda-Lucena A, Arrowsmith C, Llinás M
Proteins (2005) , 61(1), 36-43
(Details) (Pub Med ID: 16080153)Times cited: 25 - NMR data collection and analysis protocol for high-throughput protein structure determination.
Liu G, Shen Y, Atreya HS, Parish D, Shao Y, Sukumaran DK, Xiao R, Yee A, Lemak A, Bhattacharya A, Acton TA, Arrowsmith CH, Montelione GT, Szyperski T
Proceedings of the National Academy of Sciences of the United States of America (2005) , 102(30), 10487-92
(Details) (Pub Med ID: 16027363)
PDB ID(s): 1XPVTimes cited: 59 - G-matrix Fourier transform NOESY-based protocol for high-quality protein structure determination.
Shen Y, Atreya HS, Liu G, Szyperski T
Journal of the American Chemical Society (2005) , 127(25), 9085-99
(Details) (Pub Med ID: 15969587)Times cited: 32 - Single protein production in living cells facilitated by an mRNA interferase.
Suzuki M, Zhang J, Liu M, Woychik NA, Inouye M
Molecular Cell (2005) , 18(2), 253-61
(Details) (Pub Med ID: 15837428)Times cited: 70 - Assessing precision and accuracy of protein structures derived from NMR data.
Snyder DA, Bhattacharya A, Huang YJ, Montelione GT
Proteins (2005) , 59, 655-61
(Details) (Pub Med ID: 15822105)Times cited: 27 - Clustering algorithms for identifying core atom sets and for assessing the precision of protein structure ensembles.
Snyder DA, Montelione GT
Proteins (2005) , 59(4), 673-86
(Details) (Pub Med ID: 15822099)Times cited: 17 - Robotic cloning and protein production platform of the Northeast Structural Genomics Consortium.
Acton TB, Gunsalus KC, Xiao R, Ma LC, Aramini J, Baran MC, Chiang YW, Climent T, Cooper B, Denissova NG, Douglas SM, Everett JK, Ho CK, Macapagal D, Rajan PK, Shastry R, Shih LY, Swapna GV, Wilson M, Wu M, Gerstein M, Inouye M, Hunt JF, Montelione GT
Methods in Enzymology (2005) , 394(3), 210-43
(Details) (Pub Med ID: 15808222)Times cited: 82 - An integrated platform for automated analysis of protein NMR structures.
Huang YJ, Moseley HN, Baran MC, Arrowsmith C, Powers R, Tejero R, Szyperski T, Montelione GT
Methods in Enzymology (2005) , 394(3), 111-41
(Details) (Pub Med ID: 15808219)Times cited: 41 - Rapid NMR data collection.
Atreya HS, Szyperski T
Methods in Enzymology (2005) , 394(1), 78-108
(Details) (Pub Med ID: 15808218)Times cited: 48 - Resonance assignment of proteins with high shift degeneracy based on 5D spectral information encoded in G2FT NMR experiments.
Atreya HS, Eletsky A, Szyperski T
Journal of the American Chemical Society (2005) , 127(13), 4554-5
(Details) (Pub Med ID: 15796503)Times cited: 19 - The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism.
Savchenko A, Krogan N, Cort JR, Evdokimova E, Lew JM, Yee AA, Sánchez-Pulido L, Andrade MA, Bochkarev A, Watson JD, Kennedy MA, Greenblatt J, Hughes T, Arrowsmith CH, Rommens JM, Edwards AM
Journal of Biological Chemistry (2005) , 280(19), 19213-20
(Details) (Pub Med ID: 15701634)
PDB ID(s): 1NYNTimes cited: 63 - Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics.
Huang YJ, Powers R, Montelione GT
Journal of the American Chemical Society (2005) , 127(6), 1665-74
(Details) (Pub Med ID: 15701001)Times cited: 74 - Online predicted human interaction database.
Brown KR, Jurisica I
Bioinformatics (2005) , 21(9), 2076-82
(Details) (Pub Med ID: 15657099)Times cited: 204 - Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism.
Magliery TJ, Wilson CG, Pan W, Mishler D, Ghosh I, Hamilton AD, Regan L
Journal of the American Chemical Society (2005) , 127(1), 146-57
(Details) (Pub Med ID: 15631464)Times cited: 138 - Knowledge discovery in proteomics
Jurisica I, Wigle DA
CRC Press. (2005) CRC Press.
(Details)
Times cited: no data - How to use protein 1D structure predicted by PROFphd
Rost B
The Proteomics Protocols Handbook, (eds. JE Walker) (2005) The Proteomics Protocols Handbook, (eds. JE Walker)
(Details)
Times cited: no data - Microrobotic streak seeding for protein crystal growth
Georgiev A, Allen PK, Song T, Laine A, Edstrom W, Hunt J
Robotics: Science and Systems Conference, Cambridge, MA. (2005) Robotics: Science and Systems Conference, Cambridge, MA.
(Details)
Times cited: no data - Protein NMR spectroscopy
Szyperski T
Encyclopedia of Molecular Cell Biology and Molecular Medicine Wiley-CH, Weinheim (2005) Encyclopedia of Molecular Cell Biology and Molecular Medicine Wiley-CH, Weinheim
(Details)
Times cited: 0 - Scheduling functional regression tests in IBM DB2
Xia E, Jurisica I, Waterhouse J, Sloan V
IBM Cascon (2005) IBM Cascon
(Details)
Times cited: no data - A generalized approach to automated NMR peak list editing: application to reduced dimensionality triple resonance spectra.
Moseley HN, Riaz N, Aramini JM, Szyperski T, Montelione GT
Journal of Magnetic Resonance (2004) , 170(2), 263-77
(Details) (Pub Med ID: 15388090)Times cited: 26 - Improving fold recognition without folds.
Przybylski D, Rost B
Journal of Molecular Biology (2004) , 341, 255-69
(Details) (Pub Med ID: 15312777)Times cited: 39 - Automated analysis of protein NMR assignments and structures.
Baran MC, Huang YJ, Moseley HN, Montelione GT
Chemical Reviews (2004) , 104(8), 3541-56
(Details) (Pub Med ID: 15303826)Times cited: 45 - Modeling interactome: scale-free or geometric?
Przulj N, Corneil DG, Jurisica I
Bioinformatics (2004) , 20(18), 3508-15
(Details) (Pub Med ID: 15284103)Times cited: 103 - Primer Prim'er: a web based server for automated primer design
Everett JK, Acton TB, Montelione GT
Journal of Structural and Functional Genomics (2004) , 5(1-2), 13-21
(Details) (Pub Med ID: 15263839)Times cited: 8 - Meeting review: 2003 NIH Protein Structure Initiative Workshop in Protein Production and Crystallization for Structural and Functional Genomics.
Adams M, Joachimiak A, Kim R, Montelione GT, Norvell J
Journal of Structural and Functional Genomics (2004) , 5(1-2), 1-2
(Details) (Pub Med ID: 15263837)Times cited: 12 - Sequence-based prediction of protein domains.
Liu J, Rost B
Nucleic Acids Research (2004) , 32, 3522-30
(Details) (Pub Med ID: 15240828)Times cited: 50 - CHOP: parsing proteins into structural domains.
Liu J, Rost B
Nucleic Acids Research (2004) , 32(Web Server issue), W569-71
(Details) (Pub Med ID: 15215452)Times cited: 13 - Automatic target selection for structural genomics on eukaryotes.
Liu J, Hegyi H, Acton TB, Montelione GT, Rost B
Proteins (2004) , 56(2), 188-200
(Details) (Pub Med ID: 15211504)Times cited: 47 - The protein target list of the Northeast Structural Genomics Consortium.
Wunderlich Z, Acton TB, Liu J, Kornhaber G, Everett J, Carter P, Lan N, Echols N, Gerstein M, Rost B, Montelione GT
Proteins (2004) , 56(2), 181-7
(Details) (Pub Med ID: 15211503)Times cited: 18 - G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment.
Atreya HS, Szyperski T
Proceedings of the National Academy of Sciences of the United States of America (2004) , 101(26), 9642-7
(Details) (Pub Med ID: 15210958)Times cited: 76 - Cold-shock induced high-yield protein production in Escherichia coli.
Qing G, Ma LC, Khorchid A, Swapna GV, Mal TK, Takayama MM, Xia B, Phadtare S, Ke H, Acton T, Montelione GT, Ikura M, Inouye M
Nature Biotechnology (2004) , 22(7), 877-82
(Details) (Pub Med ID: 15195104)Times cited: 121 - Analyzing cellular biochemistry in terms of molecular networks.
Xia Y, Yu H, Jansen R, Seringhaus M, Baxter S, Greenbaum D, Zhao H, Gerstein M
Annual Review of Biochemistry (2004) , 73, 1051-87
(Details) (Pub Med ID: 15189167)Times cited: 82 - Protein complex prediction via cost-based clustering.
King AD, Przulj N, Jurisica I
Bioinformatics (2004) , 20(17), 3013-20
(Details) (Pub Med ID: 15180928)Times cited: 164 - Annotating proteins from endoplasmic reticulum and Golgi apparatus in eukaryotic proteomes.
Wrzeszczynski KO, Rost B
Cellular and Molecular Life Science (2004) , 61, 1341-53
(Details) (Pub Med ID: 15170512)Times cited: 14 - CHOP proteins into structural domain-like fragments.
Liu J, Rost B
Proteins (2004) , 55, 678-88
(Details) (Pub Med ID: 15103630)Times cited: 41 - Conformational changes associated with protein-protein interactions.
Goh CS, Milburn D, Gerstein M
Current Opinion in Structural Biology (2004) , 14, 104-9
(Details) (Pub Med ID: 15102456)Times cited: 118 - A method using active-site sequence conservation to find functional shifts in protein families: application to the enzymes of central metabolism, leading to the identification of an anomalous isocitrate dehydrogenase in pathogens.
Das R, Gerstein M
Proteins (2004) , 55(2), 455-63
(Details) (Pub Med ID: 15048835)Times cited: 3 - Structural proteomics: a tool for genome annotation.
Yakunin AF, Yee AA, Savchenko A, Edwards AM, Arrowsmith CH
Current Opinion in Chemical Biology (2004) , 8(1), 42-8
(Details) (Pub Med ID: 15036155)Times cited: 48 - Exploring the range of protein flexibility, from a structural proteomics perspective.
Gerstein M, Echols N
Current Opinion in Chemical Biology (2004) , 8, 14-9
(Details) (Pub Med ID: 15036151)Times cited: 43 - Biophysical characterization of the complex between double-stranded RNA and the N-terminal domain of the NS1 protein from influenza A virus: evidence for a novel RNA-binding mode.
Chien CY, Xu Y, Xiao R, Aramini JM, Sahasrabudhe PV, Krug RM, Montelione GT
Biochemistry (2004) , 43(7), 1950-62
(Details) (Pub Med ID: 14967035)Times cited: 53 - Functional topology in a network of protein interactions.
Przulj N, Wigle DA, Jurisica I
Bioinformatics (2004) , 20(3), 340-8
(Details) (Pub Med ID: 14960460)Times cited: 105 - Assignment validation software suite for the evaluation and presentation of protein resonance assignment data.
Moseley HN, Sahota G, Montelione GT
Journal of Biomolecular NMR (2004) , 28(4), 341-55
(Details) (Pub Med ID: 14872126)Times cited: 45 - GFT NMR experiments for polypeptide backbone and 13Cbeta chemical shift assignment.
Kim S, Szyperski T
Journal of Biomolecular NMR (2004) , 28(2), 117-30
(Details) (Pub Med ID: 14755156)Times cited: 36 - Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis.
Goh CS, Lan N, Douglas SM, Wu B, Echols N, Smith A, Milburn D, Montelione GT, Zhao H, Gerstein M
Journal of Molecular Biology (2004) , 336(1), 115-30
(Details) (Pub Med ID: 14741208)Times cited: 69 - Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data.
Zheng D, Aramini JM, Montelione GT
Protein Science (2004) , 13(2), 549-54
(Details) (Pub Med ID: 14718654)Times cited: 19 - Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures.
Alexandrov V, Gerstein M
BMC Bioinformatics (2004) , 5(3), 2
(Details) (Pub Med ID: 14715091)Times cited: 13 - Application of case-based reasoning in molecular biology
Jurisica I, Mylopoulos J, Yu E
Artificial Intelligence Magazine (2004) , 25(1), 85-95
(Details)
Times cited: no data - Visually-guided protein crystal manipulation using micromachined silicon tools
Georgiev A, Allen PK, Edstrom W
IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2004), Sendai, Japan. (2004) IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2004), Sendai, Japan.
(Details)
Times cited: no data - Classification of micro array genomic images with brushlet analysis and neural networks
Angelini ED, Wang Y, Laine AF
The Workshop on Genomic Signal Processing and Statistics (GENSIPS) Baltimore, MD. (2004) The Workshop on Genomic Signal Processing and Statistics (GENSIPS) Baltimore, MD.
(Details)
Times cited: no data - A microarray genomic image recognition system with Laplacian pyramid representations
Wang Y, Angelini E, Mehra M, Kim D, Laine A
IEEE Transactions on Biomedical Engineering (2004) IEEE Transactions on Biomedical Engineering
(Details)
Times cited: no data - Ontologies for knowledge management: An information systems perspective
Jurisica I, Mylopoulos J, Yu E
International Journal of Intelligent Systems (2004) , 6(4), 380-401
(Details)Times cited: 35 - Maintaining CBR systems: A machine learning approach
Arshadi N, Jurisica I
7th European Conference on Case-Based Reasoning (ECCBR-04), Advances in Case-Based Reasoning, LNAI 3155, Eds. Peter Funk and Pedro A. Gonzalez Carlo, Springer-Verlag. (2004) 7th European Conference on Case-Based Reasoning (ECCBR-04), Advances in Case-Based Reasoning, LNAI 3155, Eds. Peter Funk and Pedro A. Gonzalez Carlo, Springer-Verlag.
(Details)
Times cited: no data - Automatic prediction of protein function.
Rost B, Liu J, Nair R, Wrzeszczynski KO, Ofran Y
Cellular and Molecular Life Science (2003) , 60, 2637-50
(Details) (Pub Med ID: 14685688)Times cited: 90 - A Bayesian networks approach for predicting protein-protein interactions from genomic data.
Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M
Science (2003) , 302, 449-53
(Details) (Pub Med ID: 14564010)Times cited: 537 - TOUCHSTONEX: protein structure prediction with sparse NMR data.
Li W, Zhang Y, Kihara D, Huang YJ, Zheng D, Montelione GT, Kolinski A, Skolnick J
Proteins (2003) , 53(2), 290-306
(Details) (Pub Med ID: 14517980)Times cited: 18 - 1H(C) and 1H(N) total NOE correlations in a single 3D NMR experiment. 15N and 13C time-sharing in t1 and t2 dimensions for simultaneous data acquisition.
Xia Y, Yee A, Arrowsmith CH, Gao X
Journal of Biomolecular NMR (2003) , 27(3), 193-203
(Details) (Pub Med ID: 12975580)Times cited: 22 - Refolding out of guanidine hydrochloride is an effective approach for high-throughput structural studies of small proteins.
Maxwell KL, Bona D, Liu C, Arrowsmith CH, Edwards AM
Protein Science (2003) , 12(9), 2073-80
(Details) (Pub Med ID: 12931005)Times cited: 18 - Structural genomics: computational methods for structure analysis.
Goldsmith-Fischman S, Honig B
Protein Science (2003) , 12, 1813-21
(Details) (Pub Med ID: 12930981)Times cited: 60 - Automatic classification of sub-microlitre protein-crystallization trials in 1536-well plates.
Cumbaa CA, Lauricella A, Fehrman N, Veatch C, Collins R, Luft J, DeTitta G, Jurisica I
Acta Crystallographica Section D: Biological Crystallography (2003) , 59(Pt 9), 1619-27
(Details) (Pub Med ID: 12925793)Times cited: 41 - NORSp: Predictions of long regions without regular secondary structure.
Liu J, Rost B
Nucleic Acids Research (2003) , 31, 3833-5
(Details) (Pub Med ID: 12824431)Times cited: 88 - EVA: Evaluation of protein structure prediction servers.
Koh IY, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, Rost B
Nucleic Acids Research (2003) , 31(13), 3311-5
(Details) (Pub Med ID: 12824315)Times cited: 102 - META-PP: single interface to crucial prediction servers.
Eyrich VA, Rost B
Nucleic Acids Research (2003) , 31, 3308-10
(Details) (Pub Med ID: 12824314)Times cited: 7 - DSSPcont: Continuous secondary structure assignments for proteins.
Carter P, Andersen CA, Rost B
Nucleic Acids Research (2003) , 31, 3293-5
(Details) (Pub Med ID: 12824310)Times cited: 41 - Data mining crystallization databases: knowledge-based approaches to optimize protein crystal screens.
Kimber MS, Vallee F, Houston S, Necakov A, Skarina T, Evdokimova E, Beasley S, Christendat D, Savchenko A, Arrowsmith CH, Vedadi M, Gerstein M, Edwards AM
Proteins (2003) , 51(4), 562-8
(Details) (Pub Med ID: 12784215)Times cited: 57 - Predicted protein-protein interaction sites from local sequence information.
Ofran Y, Rost B
FEBS Letters (2003) , 544, 236-9
(Details) (Pub Med ID: 12782323)Times cited: 120 - SPINE 2: a system for collaborative structural proteomics within a federated database framework.
Goh CS, Lan N, Echols N, Douglas SM, Milburn D, Bertone P, Xiao R, Ma LC, Zheng D, Wunderlich Z, Acton T, Montelione GT, Gerstein M
Nucleic Acids Research (2003) , 31(11), 2833-8
(Details) (Pub Med ID: 12771210)Times cited: 37 - Automated protein fold determination using a minimal NMR constraint strategy.
Zheng D, Huang YJ, Moseley HN, Xiao R, Aramini J, Swapna GV, Montelione GT
Protein Science (2003) , 12(6), 1232-46
(Details) (Pub Med ID: 12761394)Times cited: 36 - A deliberate approach to screening for initial crystallization conditions of biological macromolecules.
Luft JR, Collins RJ, Fehrman NA, Lauricella AM, Veatch CK, DeTitta GT
Journal of Structural Biology (2003) , 142(1), 170-9
(Details) (Pub Med ID: 12718929)Times cited: 139 - Prediction in 1D: secondary structure, membrane helices, and accessibility.
Rost B
Methods of Biochemical Analysis (2003) , 44, 559-87
(Details) (Pub Med ID: 12647405)Times cited: 16 - Secondary structure assignment.
Andersen CA, Rost B
Methods of Biochemical Analysis (2003) , 44, 341-63
(Details) (Pub Med ID: 12647394)Times cited: 9 - Structural proteomics: toward high-throughput structural biology as a tool in functional genomics.
Yee A, Pardee K, Christendat D, Savchenko A, Edwards AM, Arrowsmith CH
Accounts of Chemical Research (2003) , 36(3), 183-9
(Details) (Pub Med ID: 12641475)Times cited: 61 - Structural genomics: current progress.
Gerstein M, Edwards A, Arrowsmith CH, Montelione GT
Science (2003) , 299, 1663
(Details) (Pub Med ID: 12637721)Times cited: 21 - Strategies for structural proteomics of prokaryotes: Quantifying the advantages of studying orthologous proteins and of using both NMR and X-ray crystallography approaches.
Savchenko A, Yee A, Khachatryan A, Skarina T, Evdokimova E, Pavlova M, Semesi A, Northey J, Beasley S, Lan N, Das R, Gerstein M, Arrowmith CH, Edwards AM
Proteins (2003) , 50(3), 392-9
(Details) (Pub Med ID: 12557182)Times cited: 56 - GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information.
Kim S, Szyperski T
Journal of the American Chemical Society (2003) , 125(5), 1385-93
(Details) (Pub Med ID: 12553842)Times cited: 212 - Ontologies for proteomics: towards a systematic definition of structure and function that scales to the genome level.
Lan N, Montelione GT, Gerstein M
Current Opinion in Chemical Biology (2003) , 7, 44-54
(Details) (Pub Med ID: 12547426)Times cited: 29 - Domains, motifs and clusters in the protein universe.
Liu J, Rost B
Current Opinion in Chemical Biology (2003) , 7, 5-11
(Details) (Pub Med ID: 12547420)Times cited: 57 - PEP: Predictions for Entire Proteomes.
Carter P, Liu J, Rost B
Nucleic Acids Research (2003) , 31, 410-3
(Details) (Pub Med ID: 12520036)Times cited: 26 - NLSdb: database of nuclear localization signals.
Nair R, Carter P, Rost B
Nucleic Acids Research (2003) , 31, 397-9
(Details) (Pub Med ID: 12520032)Times cited: 82 - Analysing six types of protein-protein interfaces.
Ofran Y, Rost B
Journal of Molecular Biology (2003) , 325, 377-87
(Details) (Pub Med ID: 12488102)Times cited: 208 - Optimizing job scheduling in the grid environment
Xia E, Jurisica I
Proceedings of The Seventh International Conference on Computer Science and Informatics, Predictive Modeling Techniques (2003) Proceedings of The Seventh International Conference on Computer Science and Informatics, Predictive Modeling Techniques
(Details)
Times cited: no data - Predicting protein structure through evolution
Rost B, Liu J, Przybylski D, Nair R, Bigelow H, Wrzeszczynski KO, Ofran Y
Chemoinformatics - From Data to Knowledge. J Gasteiger & T Engel (eds.), Wiley (2003) Chemoinformatics - From Data to Knowledge. J Gasteiger & T Engel (eds.), Wiley
(Details)
Times cited: no data - Microrobotic crystal mounting using Computer Vision
Georgiev A, Allen PK, Mezouar Y
Microrobotics for Biomanipulation Workshop, IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2003), Las Vegas, NV. (2003) Microrobotics for Biomanipulation Workshop, IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2003), Las Vegas, NV.
(Details)
Times cited: no data - Cataloguing proteins in cell cycle control
Wrzeszczynski KO, Rost B
Cell Cycle Checkpoint Control Protocols H Lieberman (ed.) (2003) Cell Cycle Checkpoint Control Protocols H Lieberman (ed.)
(Details)
Times cited: no data - Determination, analysis, and applications for drug discovery
Edwards AM, Arrowsmith CH, Hui R, Marino F, Savchenko A, Yee A
Protein Structure: Kluwer Press, ed. Daniel Chasman (2003) Protein Structure: Kluwer Press, ed. Daniel Chasman
(Details)
Times cited: no data - Neural networks predict protein structure: hype or hit?
Rost B
Artificial intelligence and heuristic methods for bioinformatics (Frasconi, P., ed.) Amsterdam ISO Press (2003) Artificial intelligence and heuristic methods for bioinformatics (Frasconi, P., ed.) Amsterdam ISO Press
(Details)
Times cited: no data - State-of-the-art in membrane protein prediction.
Chen CP, Rost B
Applied Bioinformatics (2002) , 1, 21-35
(Details) (Pub Med ID: 15130854)Times cited: 67 - Rapid analysis of protein backbone resonance assignments using cryogenic probes, a distributed Linux-based computing architecture, and an integrated set of spectral analysis tools.
Monleón D, Colson K, Moseley HN, Anklin C, Oswald R, Szyperski T, Montelione GT
Journal of Structural and Functional Genomics (2002) , 2(2), 93-101
(Details) (Pub Med ID: 12836666)Times cited: 30 - Integration of genomic datasets to predict protein complexes in yeast.
Jansen R, Lan N, Qian J, Gerstein M
Journal of Structural and Functional Genomics (2002) , 2, 71-81
(Details) (Pub Med ID: 12836664)Times cited: 48 - Structural genomics in pharmaceutical design.
Mueller L, Montelione GT
Journal of Structural and Functional Genomics (2002) , 2, 67-70
(Details) (Pub Med ID: 12836663)Times cited: 2 - SPINS: standardized protein NMR storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra.
Baran MC, Moseley HN, Sahota G, Montelione GT
Journal of Biomolecular NMR (2002) , 24(2), 113-21
(Details) (Pub Med ID: 12495027)Times cited: 15 - Novel projected 4D triple resonance experiments for polypeptide backbone chemical shift assignment.
Xia Y, Arrowsmith CH, Szyperski T
Journal of Biomolecular NMR (2002) , 24(1), 41-50
(Details) (Pub Med ID: 12449417)Times cited: 16 - Sequence conserved for subcellular localization.
Nair R, Rost B
Protein Science (2002) , 11, 2836-47
(Details) (Pub Med ID: 12441382)Times cited: 77 - Transmembrane helix predictions revisited.
Chen CP, Kernytsky A, Rost B
Protein Science (2002) , 11, 2774-91
(Details) (Pub Med ID: 12441377)Times cited: 138 - Long membrane helices and short loops predicted less accurately.
Chen CP, Rost B
Protein Science (2002) , 11, 2766-73
(Details) (Pub Med ID: 12441376)Times cited: 23 - Enhancement of the solubility of proteins overexpressed in Escherichia coli by heat shock.
Chen J, Acton TB, Basu SK, Montelione GT, Inouye M
Journal of Molecular Microbiology and Biotechnology (2002) , 4(6), 519-24
(Details) (Pub Med ID: 12432951)Times cited: 17 - Understanding biology through intelligent systems.
Jurisica I, Wigle DA
Genome Biology (2002) , 3, reports4036
(Details) (Pub Med ID: 12429057)
Times cited: 0 - Digging deep for ancient relics: a survey of protein motifs in the intergenic sequences of four eukaryotic genomes.
Zhang ZL, Harrison PM, Gerstein M
Journal of Molecular Biology (2002) , 323, 811-22
(Details) (Pub Med ID: 12417195)Times cited: 14 - Bridging structural biology and genomics: assessing protein interaction data with known complexes.
Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M
Trends in Genetics (2002) , 18, 529-36
(Details) (Pub Med ID: 12350343)Times cited: 144 - Loopy proteins appear conserved in evolution.
Liu J, Tan H, Rost B
Journal of Molecular Biology (2002) , 322, 53-64
(Details) (Pub Med ID: 12215414)Times cited: 115 - Inferring sub-cellular localization through automated lexical analysis.
Nair R, Rost B
Bioinformatics (2002) , 18 Suppl 1(31), S78-86
(Details) (Pub Med ID: 12169534)Times cited: 53 - Did evolution leap to create the protein universe?
Rost B
Current Opinion in Structural Biology (2002) , 12, 409-16
(Details) (Pub Med ID: 12127462)Times cited: 33 - Target space for structural genomics revisited.
Liu J, Rost B
Bioinformatics (2002) , 18, 922-33
(Details) (Pub Med ID: 12117789)Times cited: 48 - Reduced-dimensionality NMR spectroscopy for high-throughput protein resonance assignment.
Szyperski T, Yeh DC, Sukumaran DK, Moseley HN, Montelione GT
Proceedings of the National Academy of Sciences of the United States of America (2002) , 99(12), 8009-14
(Details) (Pub Med ID: 12060747)Times cited: 116 - Enzyme function less conserved than anticipated.
Rost B
Journal of Molecular Biology (2002) , 318, 595-608
(Details) (Pub Med ID: 12051862)Times cited: 161 - Reliability of assessment of protein structure prediction methods.
Marti-Renom MA, Madhusudhan MS, Fiser A, Rost B, Sali A
Structure (2002) , 10(3), 435-40
(Details) (Pub Med ID: 12005441)Times cited: 53 - Structural genomics analysis: characteristics of atypical, common, and horizontally transferred folds.
Hegyi H, Lin J, Greenbaum D, Gerstein M
Proteins (2002) , 47, 126-41
(Details) (Pub Med ID: 11933060)Times cited: 25 - Structural genomics: a new era for pharmaceutical research.
Liu Y, Luscombe NM, Alexandrov V, Bertone P, Harrison P, Zhang Z, Gerstein M
Genome Biology (2002) , 3, REPORTS4004
(Details) (Pub Med ID: 11864367)
Times cited: 0 - An NMR approach to structural proteomics.
Yee A, Chang X, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH
Proceedings of the National Academy of Sciences of the United States of America (2002) , 99(4), 1825-30
(Details) (Pub Med ID: 11854485)
PDB ID(s): 1ILOTimes cited: 123 - Continuum secondary structure captures protein flexibility.
Andersen CA, Palmer AG, Brunak S, Rost B
Structure (2002) , 10, 175-84
(Details) (Pub Med ID: 11839303)Times cited: 55 - Proteomics. Integrating interactomes.
Gerstein M, Lan N, Jansen R
Science (2002) , 295, 284-7
(Details) (Pub Med ID: 11786630)Times cited: 55 - Towards a systematic definition of protein function that scales to the genome level: Defining function in terms of interactions
Lan N, Jansen R, Gerstein M
Proceedings of the IEEE (2002) , 90, 1848-58
(Details)Times cited: 7 - Strukturelle Genomik
Szyperski T
Nachrichten aus der Chemie (2002) , 50, 1128-31
(Details)Times cited: 2 - Structural genomics: an approach to the protein folding problem.
Montelione GT
Proceedings of the National Academy of Sciences of the United States of America (2001) , 98, 13488-9
(Details) (Pub Med ID: 11717420)Times cited: 24 - Protein structural domain parsing by consensus reasoning over multiple knowledge sources and methods.
Kulikowski CA, Muchnik I, Yun HJ, Dayanik AA, Zhang D, Song Y, Montelione GT
MEDINFO 2001: Proceedings of the 10th World Congress on Medical Informatics (2001) , 10(Pt 2), 965-9
(Details) (Pub Med ID: 11604875)
Times cited: 0 - Annotation transfer for genomics: measuring functional divergence in multi-domain proteins.
Hegyi H, Gerstein M
Genome Research (2001) , 11, 1632-40
(Details) (Pub Med ID: 11591640)Times cited: 78 - Comparing function and structure between entire proteomes.
Liu J, Rost B
Protein Science (2001) , 10, 1970-9
(Details) (Pub Med ID: 11567088)Times cited: 133 - Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data.
Moseley HN, Monleon D, Montelione GT
Methods in Enzymology (2001) , 339(13), 91-108
(Details) (Pub Med ID: 11462827)Times cited: 96 - SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.
Bertone P, Kluger Y, Lan N, Zheng D, Christendat D, Yee A, Edwards AM, Arrowsmith CH, Montelione GT, Gerstein M
Nucleic Acids Research (2001) , 29(13), 2884-98
(Details) (Pub Med ID: 11433035)Times cited: 66 - PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.
Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M
Nucleic Acids Research (2001) , 29(8), 1750-64
(Details) (Pub Med ID: 11292848)Times cited: 37 - Protein solubility and folding monitored in vivo by structural complementation of a genetic marker protein.
Wigley WC, Stidham RD, Smith NM, Hunt JF, Thomas PJ
Nature Biotechnology (2001) , 19(2), 131-6
(Details) (Pub Med ID: 11175726)Times cited: 97 - Image-feature extraction for protein crystallization: Integrating image analysis and case-based reasoning
Jurisica I, Rogers P, Glasgow J, Fortier S, Luft J, Bianca D, DeTitta GT
Thirteenth Annual Conference on Innovative Applications of Artificial Intelligence (IAAI-2001), Seattle, WA. (2001) Thirteenth Annual Conference on Innovative Applications of Artificial Intelligence (IAAI-2001), Seattle, WA.
(Details)
Times cited: no data - Improving objectivity and scalability in protein crystallization: Integrating image analysis with knowledge discovery
Jurisica I, Rogers P, Glasgow J, Collins R, Wolfley J, Luft J, DeTitta GT
IEEE Intelligent Systems (2001) , 16(6), 26-34
(Details)
Times cited: no data - Intelligent decision support for protein crystal growth
Jurisica I, Rogers P, Glasgow J, Fortier S, Luft J, Wolfley J, Bianca M, Weeks D, DeTitta GT
IBM Systems Journal (2001) , 40, 394-409
(Details)Times cited: 33 - High throughput macromolecular crystallization: An application of case-based reasoning and data mining
Jurisica I, Rogers P, Glasgow J, Fortier S, Collins R, Wolfley J, Luft J, DeTitta GT
Methods in Macromolecular Crystallography 2001, L. Johnson and D. Turk (Eds.),NATO Science Series: Life Sciences, Kluwer Academic Press (2001) , 325
(Details)
Times cited: no data - Macromolecular Crystallization in a High Throughput Laboratory - The Search Phase
Luft J, Wolfley J, Jurisica I, Glasgow J, Fortier S, DeTitta GT
Journal of Crystal Growth (2001) , 232, 591-595
(Details)Times cited: 53 - Synchrotron crystallography.
Hendrickson WA
Trends in Biochemical Sciences (2000) , 25, 637-43
(Details) (Pub Med ID: 11116192)Times cited: 77 - Protein NMR spectroscopy in structural genomics.
Montelione GT, Zheng D, Huang YJ, Gunsalus KC, Szyperski T
Nature Structural & Molecular Biology (2000) , 7 Suppl, 982-5
(Details) (Pub Med ID: 11104006)Times cited: 132 - Protein production: feeding the crystallographers and NMR spectroscopists.
Edwards AM, Arrowsmith CH, Christendat D, Dharamsi A, Friesen JD, Greenblatt JF, Vedadi M
Nature Structural & Molecular Biology (2000) , 7 Suppl, 970-2
(Details) (Pub Med ID: 11104003)Times cited: 111 - Genome analyses of spirochetes: a study of the protein structures, functions and metabolic pathways in Treponema pallidum and Borrelia burgdorferi.
Das R, Hegyi H, Gerstein M
Journal of Molecular Microbiology and Biotechnology (2000) , 2, 387-92
(Details) (Pub Med ID: 11075910)Times cited: 6 - Structural proteomics: prospects for high throughput sample preparation.
Christendat D, Yee A, Dharamsi A, Kluger Y, Gerstein M, Arrowsmith CH, Edwards AM
Progress in Biophysics & Molecular Biology (2000) , 73, 339-45
(Details) (Pub Med ID: 11063779)Times cited: 58 - The current excitement in bioinformatics-analysis of whole-genome expression data: how does it relate to protein structure and function?
Gerstein M, Jansen R
Current Opinion in Structural Biology (2000) , 10, 574-84
(Details) (Pub Med ID: 11042457)Times cited: 39 - Measuring shifts in function and evolutionary opportunity using variability profiles: a case study of the globins.
Naylor GJ, Gerstein M
Journal of Molecular Evolution (2000) , 51, 223-33
(Details) (Pub Med ID: 11029067)Times cited: 27 - Structural proteomics of an archaeon.
Christendat D, Yee A, Dharamsi A, Kluger Y, Savchenko A, Cort JR, Booth V, Mackereth CD, Saridakis V, Ekiel I, Kozlov G, Maxwell KL, Wu N, McIntosh LP, Gehring K, Kennedy MA, Davidson AR, Pai EF, Gerstein M, Edwards AM, Arrowsmith CH
Nature Structural & Molecular Biology (2000) , 7(10), 903-9
(Details) (Pub Med ID: 11017201)
PDB ID(s): 1DW7Times cited: 212 - A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome.
Drawid A, Gerstein M
Journal of Molecular Biology (2000) , 301, 1059-75
(Details) (Pub Med ID: 10966805)Times cited: 101 - Proteomics of Mycoplasma genitalium: identification and characterization of unannotated and atypical proteins in a small model genome.
Balasubramanian S, Schneider T, Gerstein M, Regan L
Nucleic Acids Research (2000) , 28, 3075-82
(Details) (Pub Med ID: 10931922)Times cited: 21 - Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels.
Lin J, Gerstein M
Genome Research (2000) , 10, 808-18
(Details) (Pub Med ID: 10854412)Times cited: 120 - Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins.
Jansen R, Gerstein M
Nucleic Acids Research (2000) , 28, 1481-8
(Details) (Pub Med ID: 10684945)Times cited: 79
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Average number of citations per publication (methodological): 39.1